Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 390 / 3e-131 Transmembrane amino acid transporter family protein (.1) AT4G35180 384 / 1e-129 LHT7 LYS/HIS transporter 7 (.1) AT5G40780 234 / 7e-72 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 217 / 3e-65 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G61270 213 / 9e-64 Transmembrane amino acid transporter family protein (.1) AT1G48640 213 / 2e-63 Transmembrane amino acid transporter family protein (.1) AT3G01760 210 / 1e-62 Transmembrane amino acid transporter family protein (.1) AT1G67640 199 / 1e-58 Transmembrane amino acid transporter family protein (.1) AT1G25530 191 / 2e-55 Transmembrane amino acid transporter family protein (.1) AT1G71680 174 / 8e-49 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022642 [exp] 873 / 0 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10003338 [exp] 406 / 3e-137 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 399 / 4e-135 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10032751 [exp] 397 / 1e-133 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 396 / 3e-133 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 395 / 3e-133 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 394 / 2e-132 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10022641 [exp] 221 / 7e-68 AT1G47670 302 / 4e-99 Transmembrane amino acid transporter family protein (.1) Lus10022329 [exp] 222 / 7e-67 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G181100 [exp] 552 / 0 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 518 / 0 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 470 / 1e-162 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 406 / 2e-137 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 398 / 6e-134 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 390 / 4e-131 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G179000 [exp] 225 / 3e-68 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 219 / 6e-66 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335300 [exp] 216 / 1e-64 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 210 / 9e-63 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10003339 pacid=23148056 polypeptide=Lus10003339 locus=Lus10003339.g ID=Lus10003339.BGIv1.0 annot-version=v1.0 ATGGCTGAGGTTCACCCAATTGGTCAAGAATCTCCACACGTCATGATCATCACCATTGATGCAACTTCAGAGGAGGGTGCTAATCCTAATCCTGATGCTA CAAGGATTCTAGAAGCTGTAGCTGAAGAAGAAGCAAACCCAGTTGATGCTTGGCTGCCTATAACAGAATCAAGAAATGGAAGCCTTTGGAGCTGTGTTTT CCATTTGGTCTCTTCTGGTATTGGTGTCCAAGCTCTGCTCCTACCAGTGGCATTTGCTTCCCTTGGATGGGCATGGGGTATTATAAGCTTGACAATAGCT TTCATATGGCAGCTCTACACAATATGGGTTCTAGTCCAGCTCCATCAACCAGCAGTCCATGGAACTCGTTACAGTAGATTTCTTCAGCTTGCAATCGCTG CTTTTGGTCCAAAGCTAGGTAAAATCCTGGCGATATTTCCAGTGATGTACCTATCAGGAGGGTCATGCGTAGTGTTCATAATCACAGGGAGTGGAGCTAT GGAGCTCTTCTTCAAGGAGATCTCAAGCTCCTCTGCTGCATTGACTGGAGCAGAGTGGTACTTGGTGTTCATAGCCATGGCCATACTAATGGCTGCGCAG CGTCCGAATCTTGATTCCATTTCAGGGTTCTCGCTCGTTGCAGCCATCACTGGGGTTACCTACTGCACGATGTTGTGGGCAATCCCAGTTGCTAATGGCA GAGTTGATGATGCTGGTGGTTTAAAGATGAAGGTGGAATCTGGGATGGGTAGAGTGAGTGAGATTCTGAATGGGATTGGGATTGTCATGCTTTCTTTCAG AGGGCATAATCTTGTGCTTGAAATTCAGGGGACATTGGCTTCAGGGCCTAAAGCTTCATCAAAGAAGAAGATGTTGCGGGCAGTAATCATCTCATATGCA ATAGTCATGGCATGCTTGTTCCCTCTTGCCATTGCTGGCTTTTGGGCTTATGGAAATAAGGTACCTTCAAGTGGGGGATTGCTCAAGGCATTCACAAACT TCCACCACCCCAACACATCAAAGCCACTAAAAGCCATAATCTACTTCCTCATCCTCTTAAACTGCCTAACATCCTTTCAAATCTACGCCATGCCGGTCTT CGACAACCTCGAAAGCAGATTCGTCGCCCTCAAGAACAAGCCGTGCCCGAAATGGGTTCGAGTTTCGACCAAGCTCTTCTTCGGAGGGCTAACGTTCTTA ATTTCCGTCGCCTTTCCGTTCCTACCTAGCCTAGCTCCGTTAGTAGGCGGAATTGCCCTGCCCCTCACTTTTGCCTATCCTTGCTTGATGTGGATTGCCA TGAAGAAGGGGAAATCCGCACACCGTAAGGATTCTTTGGTTTGGGGTTTTAATTTGTTGGTTGGTGGTTTGGGGATGGGATTGAGTGTTCTTTTGGTGGC TGGTGCTATTTGGAATTTGGCTACAAAGGGACTTCGTGCCAACTTTTTTAGACCATAG
AA sequence Show only first row Show all	>Lus10003339 pacid=23148056 polypeptide=Lus10003339 locus=Lus10003339.g ID=Lus10003339.BGIv1.0 annot-version=v1.0 MAEVHPIGQESPHVMIITIDATSEEGANPNPDATRILEAVAEEEANPVDAWLPITESRNGSLWSCVFHLVSSGIGVQALLLPVAFASLGWAWGIISLTIA FIWQLYTIWVLVQLHQPAVHGTRYSRFLQLAIAAFGPKLGKILAIFPVMYLSGGSCVVFIITGSGAMELFFKEISSSSAALTGAEWYLVFIAMAILMAAQ RPNLDSISGFSLVAAITGVTYCTMLWAIPVANGRVDDAGGLKMKVESGMGRVSEILNGIGIVMLSFRGHNLVLEIQGTLASGPKASSKKKMLRAVIISYA IVMACLFPLAIAGFWAYGNKVPSSGGLLKAFTNFHHPNTSKPLKAIIYFLILLNCLTSFQIYAMPVFDNLESRFVALKNKPCPKWVRVSTKLFFGGLTFL ISVAFPFLPSLAPLVGGIALPLTFAYPCLMWIAMKKGKSAHRKDSLVWGFNLLVGGLGMGLSVLLVAGAIWNLATKGLRANFFRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	0	1
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	1.4	0.9299
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	2.4	0.9165
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	2.8	0.9168
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	3.5	0.9141
AT2G40460			Major facilitator superfamily ...		Lus10034206 [exp]	4.2	0.8787
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	4.5	0.9011
					Lus10036790 [exp]	5.7	0.8849
					Lus10026092 [exp]	5.9	0.8941
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003525 [exp]	6.9	0.9006
AT5G20950			Glycosyl hydrolase family prot...		Lus10023604 [exp]	8.7	0.8358

Compare expression of checked genes

Lus10003339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.