Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09400 1119 / 0 KUP7 K+ uptake permease 7, K+ uptake permease 7 (.1) AT4G33530 1058 / 0 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT1G60160 817 / 0 Potassium transporter family protein (.1) AT4G13420 554 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT4G19960 531 / 4e-177 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT2G35060 521 / 2e-173 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT2G40540 502 / 8e-166 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 496 / 1e-163 Potassium transporter family protein (.1) AT1G31120 478 / 1e-156 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G30070 469 / 3e-154 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036160 [exp] 1264 / 0 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10012993 [exp] 806 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10018324 [exp] 528 / 8e-176 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10027004 [exp] 523 / 3e-174 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10025493 [exp] 520 / 8e-173 AT4G13420 826 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10030857 [exp] 514 / 9e-171 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10038361 [exp] 513 / 2e-170 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10030632 [exp] 505 / 4e-167 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10036221 [exp] 498 / 1e-164 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G023900 [exp] 1186 / 0 AT5G09400 1120 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.001G205500 [exp] 1164 / 0 AT5G09400 1081 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.010G094400 [exp] 827 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.014G132500 [exp] 556 / 0 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G123800 [exp] 551 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G069650 [exp] 549 / 0 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.003G109700 [exp] 548 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G144900 [exp] 543 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.001G123700 [exp] 543 / 0 AT2G35060 1047 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.002G237500 [exp] 536 / 2e-178 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10003402 pacid=23169612 polypeptide=Lus10003402 locus=Lus10003402.g ID=Lus10003402.BGIv1.0 annot-version=v1.0 ATGGCGGACGACGCTGGTGGTGGCAGTGCAAACAGCAGTATTGTTAGTTTCTGTGCTGGTGGTGGCTCCGACATAAGCGGCAGGCTCAGATCCATGGACT CGGTCGAGTCACGCTGGGTCTTCCAAGACGACGACGACGACTCCGTGATTGATGAAGAAGATGAGGATTCCTTTCACAACCGTCTTACTGGATTGGATTC CGAAGACGACGACGACGACGAAGATGATAATGCAGAACAGCGCCTGATCCGCACCGGCCCTCGGATCGATTCCTTCGATGTTGAAGCGCTTGAGATCCCA AGTGCCCAGCGAAATGAGTACGAGGATTTCAGCATGAGCAGGAAATTTATACTTGCTTTTCAGACACTTGGTGTTGTATTCGGTGATGTTGGAACAAGTC CCTTGTACACATTTGATGTTGTTTTTACGAAAGCATCGATTAGCGGAGAAGAAGATGTACTGGGTGCATTGTCATTGGTCCTATATATGTTGATCTTAGT ACCTCTTCTCAAATATGTCATGGTTGTTCTTTGGGCTAATGATGATGGAGAAGGAGGTACTTTTGCTTTGTACTCATTGATTTGCCGGCACGCTAAGGTC AGTCTTCTTCCAAATCAGCTCCCTTCAGACACTCGTATTTCAAGCTTCCAGCTTAAGGTGCCATCTCCAGAGCTGGAGAGATCATTGAAAATCAAGGAAA GGCTAGAGAATTCACTAACTCTGAAAAAGCTACTGCTGATTTTAGTGCTTGCTGGTACTTCAATGGTGATAGCCGATGGAGTTGTTACTCCAGCGATGTC AGTGATGTCAGCTGTTGGTGGTCTGAAGGTTGGAGTAGCTTCAGTGGAGCAAGACCAAGTGGTGATGATTTCCGTAGCCTTTCTTGTAATTTTGTTTAGT TTACAGAAATTTGGTACAAGCAAAGTGGGACTTGCTGTGGGTCCTGCTCTATTTGTATGGTTTTGTTCTCTAGCTGGCATTGGCATTTATAATCTTGTCA AATATGACAACAGAGTATTAAGAGCTTTGAATCCTGCTTATATCTATTACTTCTTCAAGCGGGATTCAGCAAAGGCCTGGCGTGCTCTTGGAGGTTGCCT TTTATGTGCAACGGGTTCTGAAGCAATGTTTGCGGATCTTTGCTATTTTTCTGTAAGATCAATCCAGCTTACTTTTGTATTGCTCGTGTTGCCTTGCCTT TTGCTGGGTTATTTGGGTCAAGCTGCATATTTGATGCAAAATCATACCGAAGTTCTGGCTGAACAGGCTTTCTTTTCTTCGGTTCCAAGTGGTGCTTTCT GGCCTATCTTCCTTATTGCCAATTTTGCTGCATTGATTGCATGTCGAGCAATGACAACGGCTACATTTTCTTGTATAAAACAGTCAACAGCACTTGGTTG TTTCCCGAGACTTAAGATTATTCACACTTCTCGGAAGTTCATGGGTCAAATATATATTCCAGTCATAAACTGGTTTCTGCTGGGGATGTGTCTAGCGTTC GTCTGCTCTATTCAAAGCATAACCGAGCTGGGAAATGCATATGGGATTGCCGAGCTTGGGGTGATGATGATGACAACCATTTTGGTGACGCTTGTTATGC TTCTAATCTGGCAGATAAATATCTTGGTTGTTTTCAGCTTTCTTGTTATCTTCCTGGGAATTGAATTGACATTTTTCTCATCGGTTTTGAGCGATATGGG AGATGGAAGTTGGATAGTATTGGTGTTTGCTGGAATTATGTTCCTTATCATGTATATTTGGAACTATGGAAGCAAGCTCAAATATGAAACTGAAGTGAAA CAGAAGTTGTCTATGGATTTGATGCGGGAATTAGGTTCCAACCTGGGAACAATTAGGGCTCCTGGAATTGGGTTGCTTTACAACGAGCTGGTGAAAGGAA TACCTGCAATTTTTGGTCATTTTCTGACAACTCTTCCAGCAATTCATTCAATGATCATCTTTGTGTGTATAAAGTATGTCCCAGTCCCAGTTGTACCTCA AAGCGAAAGGTTCCTTTTCCGTCGAGTCTGCCCAAAAGGCTACCATATATTTCGTTGCATTGCCAGGTATGGGTACAAAGATGTGCGGAAAGAGAATCAC CAGGCCTTTGAACAGCTGTTAATTGAGAGTCTGGAGAAGTTCATCAGGAGGGAGGCGCAGGAGCGGTCGTTGGAAAGTGAGGGAGATGATGATACAGAGT CGGAAGATGATTACAGTAACACGAGAGTATTAGTTGCACCGAATGGAAGTGTGTATTCGCTTGGTATACCCCTTCTAGGAGGAGAGTACGAGGAAACAAG TAGGAAATGTGTTGTTGTTTCAGAGGGAAGCACTTCTTCAGAGGTAGTGAAATCAGATGCGGTGGTTGATCCTGAGCAGAGTCTTGAGAGTGAGCTATCT TTCATTAGAAAAGCTAAGGAATCAGGCGTGGTTTATCTTCTTGGACACGGTGATATTAGAGCAAGGAAGGAATCGTGGTTCATCAAGAAGCTAGTGATAA ACTACTTGTATGCTTTCCTGCGAAAGAATTGCAGAAGAGGGATTGCCAATTTGAGTGTTCCTCACTCAAATCTCATGCAGGTTGGCATGACATACATGGT TTGA
AA sequence Show only first row Show all	>Lus10003402 pacid=23169612 polypeptide=Lus10003402 locus=Lus10003402.g ID=Lus10003402.BGIv1.0 annot-version=v1.0 MADDAGGGSANSSIVSFCAGGGSDISGRLRSMDSVESRWVFQDDDDDSVIDEEDEDSFHNRLTGLDSEDDDDDEDDNAEQRLIRTGPRIDSFDVEALEIP SAQRNEYEDFSMSRKFILAFQTLGVVFGDVGTSPLYTFDVVFTKASISGEEDVLGALSLVLYMLILVPLLKYVMVVLWANDDGEGGTFALYSLICRHAKV SLLPNQLPSDTRISSFQLKVPSPELERSLKIKERLENSLTLKKLLLILVLAGTSMVIADGVVTPAMSVMSAVGGLKVGVASVEQDQVVMISVAFLVILFS LQKFGTSKVGLAVGPALFVWFCSLAGIGIYNLVKYDNRVLRALNPAYIYYFFKRDSAKAWRALGGCLLCATGSEAMFADLCYFSVRSIQLTFVLLVLPCL LLGYLGQAAYLMQNHTEVLAEQAFFSSVPSGAFWPIFLIANFAALIACRAMTTATFSCIKQSTALGCFPRLKIIHTSRKFMGQIYIPVINWFLLGMCLAF VCSIQSITELGNAYGIAELGVMMMTTILVTLVMLLIWQINILVVFSFLVIFLGIELTFFSSVLSDMGDGSWIVLVFAGIMFLIMYIWNYGSKLKYETEVK QKLSMDLMRELGSNLGTIRAPGIGLLYNELVKGIPAIFGHFLTTLPAIHSMIIFVCIKYVPVPVVPQSERFLFRRVCPKGYHIFRCIARYGYKDVRKENH QAFEQLLIESLEKFIRREAQERSLESEGDDDTESEDDYSNTRVLVAPNGSVYSLGIPLLGGEYEETSRKCVVVSEGSTSSEVVKSDAVVDPEQSLESELS FIRKAKESGVVYLLGHGDIRARKESWFIKKLVINYLYAFLRKNCRRGIANLSVPHSNLMQVGMTYMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Lus10003402 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10006984 [exp]	8.1	0.9796
AT1G14550			Peroxidase superfamily protein...		Lus10009902 [exp]	11.7	0.9784
					Lus10024872 [exp]	14.5	0.9759
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	14.9	0.9761
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	20.0	0.9759
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	22.4	0.9755
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030806 [exp]	25.2	0.9751
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	28.7	0.9750
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	29.2	0.9745
					Lus10014508 [exp]	29.3	0.9742

Compare expression of checked genes

Lus10003402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.