Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30450 1432 / 0 HAP5, ATCCC1, CCC1 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) AT1G17930 48 / 4e-05 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036156 [exp] 1811 / 0 AT1G30450 1536 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Lus10000067 [exp] 453 / 4e-152 AT1G30450 403 / 6e-135 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Lus10017017 [exp] 92 / 1e-21 AT1G48120 40 / 9e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10029535 [exp] 85 / 1e-18 AT1G48120 50 / 1e-07 hydrolases;protein serine/threonine phosphatases (.1) Lus10030335 [exp] 85 / 1e-17 ND / Lus10025297 [exp] 80 / 2e-17 ND 52 / 2e-08 Lus10004097 [exp] 82 / 3e-16 AT1G48120 61 / 4e-10 hydrolases;protein serine/threonine phosphatases (.1) Lus10019051 [exp] 74 / 6e-16 ND / Lus10018813 [exp] 72 / 1e-14 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357600 [exp] 1453 / 0 AT1G30450 1458 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Potri.011G090900 [exp] 1445 / 0 AT1G30450 1456 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease CL0062 [flax] [poplar] PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10003407 pacid=23169616 polypeptide=Lus10003407 locus=Lus10003407.g ID=Lus10003407.BGIv1.0 annot-version=v1.0 ATGGCCAATGGAGAAGTTGAGGAAGGTGACTTCCCTGGACGTGGTGGTCGCAAATACCAGCCGGTGGTCGCTCACGACAGTGCCGTGCTTGAGATGTCTA ATTTGGATCCAGGATCTACTTCTTCTCCCACCAAACGTCCGCCCGACCTCAAAAATGTGAAAGTTGGTACCATAGCACCAGATCCGACTGATCCTCACGA TCCTTCTCATGGAGGTGGTAGTAGAGGTGGCAGGGAATACAACTTGGAGTTGTTTGGTTTCGATTCTCTTGTCAACATTCTTGGCCTTAAAAGTATGACA GGAGAACATGTTCCATCAACTTCTAGCCCTGGGGACGGTGATGACCATCCTGTTCCTTTTGAACGTCCACGAGTTGATGCTCTGAAAATGGGAACTATGA TGGGTGTTTTTATTCCATGCCTGCAAAGCATAATGGGAATTATATACTACATACGATTTTCTTGGATTATTGGCATGGCTGGTATAGGTCAATCATTAGT GCTGGTAGCTTGTTGTGGTTTATGTACTTTCCTTACTGTTTTATCACTGAGTGCGATTGCCACAAATGGTGCAATGAAGGGTGGGGGTCCATACTATCTC ATTGGTCGTGCCCTTGGCCCAGAGGTGGGAGTTAGTATTGGATTGTGTTTCTTCCTTGGGAATGCAGTTGCTGGAGCCCTTTACGTGTTGGGAGCTGTTG AAACATTTCTAAAAGCTGTCCCAGCTGCCGGCATTTTTAGAGTGACTATAACACAAATCAACGGAACAACAGCTGCAGAGCCCATACAAGCTCCAAGTTC ACATGACCTGCAAATTTATGGGATTGTTATTACCATCATTTTATGCTTCATTGTGTTTGGTGGTGTGAAAATGATCAATCGCGTCGCACCTGCTTTCTTG ATACCTGTTCTATTTTCAATGTCTTGCATCTTTACTGGGTGGTTTTTGGCAAGGAATGATTATCCTGCAAAGGGAATAACGGGCTTGAGCATGCAAAGCT TTAAAGAGAACTGGGGTTCAGCGTATCAGTTCACCAATGATGTTGGGATACCTGATCCTCACGGTGATGTCTACTGGAATTTCAATGCTCTAGTAGGTCT CTTTTTCCCTGCTGTAACTGGAATAATGGCGGGTTCCAATAGATCTGCGGCACTAAAAGACACCCAGCGTTCAATTCCAGTCGGGACATTGGCTGCTACT CTCACTACCACTGCTCTCTATCTCGTTTCAGTGTTGTTTTTTGGTGCAGTTGCCACCAGGCAAAGACTTCTAACTGACAGGCTACTCACAGCCACAATTG CTTGGCCATCCCCTGCTATTATCTATATCGGAATTATCCTTTCTACCTTGGGTGCTGCCCTCCAAAGCTTGACTGGAGCCCCACGCCTTCTTGCAGCGAT AGCCAATGATGATATTCTACCTTTACTTAACTACTTCAAAGTGCCCGAGAACCAGGAGCCCCATGTTGCTACTCTGTTCACTGCATTAATCTGTATTGGA TGTGTTATTATTGGCAATCTGGATCTTATAACGCCAACTGTGACAATGTTTTTCCTTTTGTGTTATTGTGGTGTCAATTTGTCATGTTTCCTTCTCGACC TTCTTGATGCCCCTAGTTGGCGACCACGCTGGAAGTTCCATCATTGGAGCCTTTCTCTTCTTGGAGCATCGCTTTGTATAGTTATAATGTTCTTGATCTC CTGGTCGTTTACTATCGTATCTCTCGGTCTTGCAAGTCTCATATATAAATATGTCGGCATAAAGGGTAAGGCTGGAGATTGGGGTGACGGCTTTAAGAGT GCATATTTTCAACTGGCACTCCGTAGTCTGCGTTCACTTGGAGCTAACCAAGTGCATCCGAAGAATTGGTACCCTATACCTCTCATATTCTGCCGTCCAT GGGGTAAGCTGCCAGAAAATGTGCCGTGCCACCCTAAGCTGGCTGATTTTGCAAATTGCATGAAGAAAAAGGGCCGTGGAATGTCTATATTTGTTTCCAT ATTAGATGGAGACTATCATGAATGTGCTGAAGATGCAAAGACAGCATGCAAACAACTCAGTACTTACATTGATTACAAGCGGTGTGAAGGTGTTGCGGAA ATAGTGGTGGCCCGTAATATGTCGGACGGCTTCCGTGGAATCATTCAGACAATGGGCTTGGGAAATCTCAAGCCTAACATTGTGGTGATGAGGTATCCAG AAATATGGCGGCGTGAAAATCTGACAGAGATTCCAGCCACATTTGTGGGAATTATCAATGACTGCATCGTCGCAAACAAGGCGGTAGTCATTGTGAAGGG TCTTGATGAGTGGCCTAACGAGTATCAAAAGCAATATGGTACGATTGATTTGTATTGGATTGTAAGAGATGGAGGTCTAATGCTCTTGCTTTCGCAGCTC CTGCTTACCAAAGACAGCTTCGAGAGTTGTAAGATTCAGGTGTTCTGCATTGCAGAGGAGGATTCAGATGCAGAGGAGCTGAAAGCTGATGTGAAGAAGT TTTTATATGATCTACGAATGCAAGCTGAAGTGATAGTGATATCAATGAAATCATGGCACTCAAATGCAGAAGGTGCTCAACCGGACGAATCATTGGAAGC ATTCAATGCTGCTCAAAAGAGAATTGCGAGTAATTTATCGGAGATGAGGTCGAATATGTCAGTGAACGAGCAGCAGGTAGACAAATATCTTCAAACAACG CTGAAATTGAACACAACCATATTAAGACATTCGAGAATGGCTGCAGTGGTACTTGTGAGCTTGCCGCCGCCTCCAGATAACCATCCAGCCTACTTCTACA TGGAATACATGGATCTATTAGTAGAGAATGTGCCAAGGCTTTTAATTGTCAGAGGCTACCGATGGATTACTTGTATGGACCTACACCTCCGTGCGTCGAC CCTGAGGCTATCGTTGGAGAACTACTTTGAGGCGAGCGCAACCGATATCAAGCCGGTGAAATTTTCGACAATGAGCTTGGGCACTGGAGTGGTTTCCGAC CATAACACAAAGATTGGACGAGGACAAGCTCCGAGGTCCAGATGCATTGAGACTTATCGGCAACACCCGTCTGTCTATCGATGGAAGGCCTGGATGAACG AGATGACTCGAGGCATGTTGCGTCCAGAGTACCGACGACTTTTCGATGAGGGCACCCCGTTCGTGTGGGTTCCCTACCATGGTAGTGTCGATTCGACATG CTTCACTGCGGCACACAGAGTCGTTGCCCCACTGATTTCGCCTCGTAACATCTCTTGGTACTGGCCAGACCGTGTCCTCAAACGGTTGGGGATGTCCCAA CCCATCCCAATGTGGACATGTTGGAGGGCGAGGTCATGTTCTTGCTTAGACTGA
AA sequence Show only first row Show all	>Lus10003407 pacid=23169616 polypeptide=Lus10003407 locus=Lus10003407.g ID=Lus10003407.BGIv1.0 annot-version=v1.0 MANGEVEEGDFPGRGGRKYQPVVAHDSAVLEMSNLDPGSTSSPTKRPPDLKNVKVGTIAPDPTDPHDPSHGGGSRGGREYNLELFGFDSLVNILGLKSMT GEHVPSTSSPGDGDDHPVPFERPRVDALKMGTMMGVFIPCLQSIMGIIYYIRFSWIIGMAGIGQSLVLVACCGLCTFLTVLSLSAIATNGAMKGGGPYYL IGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAGIFRVTITQINGTTAAEPIQAPSSHDLQIYGIVITIILCFIVFGGVKMINRVAPAFL IPVLFSMSCIFTGWFLARNDYPAKGITGLSMQSFKENWGSAYQFTNDVGIPDPHGDVYWNFNALVGLFFPAVTGIMAGSNRSAALKDTQRSIPVGTLAAT LTTTALYLVSVLFFGAVATRQRLLTDRLLTATIAWPSPAIIYIGIILSTLGAALQSLTGAPRLLAAIANDDILPLLNYFKVPENQEPHVATLFTALICIG CVIIGNLDLITPTVTMFFLLCYCGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGASLCIVIMFLISWSFTIVSLGLASLIYKYVGIKGKAGDWGDGFKS AYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLSTYIDYKRCEGVAE IVVARNMSDGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQKQYGTIDLYWIVRDGGLMLLLSQL LLTKDSFESCKIQVFCIAEEDSDAEELKADVKKFLYDLRMQAEVIVISMKSWHSNAEGAQPDESLEAFNAAQKRIASNLSEMRSNMSVNEQQVDKYLQTT LKLNTTILRHSRMAAVVLVSLPPPPDNHPAYFYMEYMDLLVENVPRLLIVRGYRWITCMDLHLRASTLRLSLENYFEASATDIKPVKFSTMSLGTGVVSD HNTKIGRGQAPRSRCIETYRQHPSVYRWKAWMNEMTRGMLRPEYRRLFDEGTPFVWVPYHGSVDSTCFTAAHRVVAPLISPRNISWYWPDRVLKRLGMSQ PIPMWTCWRARSCSCLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10003407 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037525 [exp]	3.0	0.9509
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	3.5	0.9446
AT3G11950		ATHST	TRAF-like superfamily protein ...		Lus10016218 [exp]	5.3	0.9325
AT3G27325			hydrolases, acting on ester bo...		Lus10032122 [exp]	6.5	0.9332
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10040465 [exp]	7.7	0.9339
AT3G60920			unknown protein		Lus10009306 [exp]	8.7	0.9391
AT2G16405			Transducin/WD40 repeat-like su...		Lus10017483 [exp]	8.8	0.8985
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	8.8	0.9109
AT1G60070			Adaptor protein complex AP-1, ...		Lus10012988 [exp]	8.8	0.9275
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	9.2	0.9364

Compare expression of checked genes

Lus10003407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.