Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25090 158 / 4e-49 AtENODL13 early nodulin-like protein 13 (.1) AT2G25060 147 / 3e-45 AtENODL14 early nodulin-like protein 14 (.1) AT5G57920 142 / 7e-43 AtENODL10 early nodulin-like protein 10 (.1) AT4G31840 139 / 8e-42 AtENODL15 early nodulin-like protein 15 (.1) AT4G30590 136 / 9e-41 AtENODL12 early nodulin-like protein 12 (.1) AT2G23990 129 / 2e-37 AtENODL11 early nodulin-like protein 11 (.1.2) AT3G20570 115 / 2e-32 AtENODL9 early nodulin-like protein 9 (.1) AT5G53870 108 / 3e-28 AtENODL1 early nodulin-like protein 1 (.1) AT3G18590 100 / 1e-26 AtENODL5 early nodulin-like protein 5 (.1) AT1G48940 98 / 9e-26 AtENODL6 early nodulin-like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026880 [exp] 260 / 2e-89 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10019955 [exp] 111 / 5e-31 AT4G30590 120 / 1e-34 early nodulin-like protein 12 (.1) Lus10043063 [exp] 110 / 5e-30 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10011158 [exp] 106 / 1e-28 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10036257 [exp] 100 / 5e-27 AT2G25060 110 / 3e-31 early nodulin-like protein 14 (.1) Lus10009617 [exp] 93 / 1e-23 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1) Lus10032111 [exp] 91 / 6e-23 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10039852 [exp] 90 / 2e-22 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10022318 [exp] 90 / 2e-22 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G018200 [exp] 184 / 2e-59 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.006G264600 [exp] 182 / 1e-58 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.006G184100 [exp] 163 / 3e-51 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.001G419200 [exp] 108 / 3e-29 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.011G117800 [exp] 104 / 7e-27 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.015G052000 [exp] 100 / 8e-27 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.011G135400 [exp] 100 / 1e-26 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.001G398800 [exp] 100 / 3e-25 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.017G011200 [exp] 94 / 5e-24 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.001G338800 [exp] 91 / 5e-23 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10003432 pacid=23164887 polypeptide=Lus10003432 locus=Lus10003432.g ID=Lus10003432.BGIv1.0 annot-version=v1.0 ATGACGCTGCCGCCGCCGTTCCTTCTCCTCCTTACCCTCCTTTCTCTTCTCCTGCTTCTGTTTCGCCAGGAGCAGCGCTACTCCTCACAATTCGCCGCCG CCAAAGAGCTACTAGTCGGCGGGAAGACCGATGCCTGGACTGTTCCATCTTCGGAATCCGATTCCCTCAACAGATGGGCCCAAAACACCCGCTTCCGCAT CGGCGACTCTCTTGTGTGGAAGTACGACGGCACAAAGGACTCGGTGATGCAAGTGAGCAGGAAAGCATACCTGGGATGCAACACGACAGAGCCAATAGCA GAGTACAAAGACGGGGAAACCAAAGTGAAGCTGGAAAGATCAGGTGCTTTCTACTTCATCAGTGGAGCTGAAGGACATTGCAAGCAAGGTCAGAAGGTCA TCATCGTTGTCTTGTCTTCCAGGAAGAAGACGACTGTTGTTTTTTCACCTGCTCCAGCTCCTTCTCCTTCTGATGCTATGGCTCCTGCTGTTGCTCCCAC CAGCGGTGGCGCTTCTTCAAGTTTCAATCTTGCTGCTGTTAGTGCTCTGTTTTCGGGGTTGGGTCTTGTGGGTTTGCTGTTCTGA
AA sequence Show only first row Show all	>Lus10003432 pacid=23164887 polypeptide=Lus10003432 locus=Lus10003432.g ID=Lus10003432.BGIv1.0 annot-version=v1.0 MTLPPPFLLLLTLLSLLLLLFRQEQRYSSQFAAAKELLVGGKTDAWTVPSSESDSLNRWAQNTRFRIGDSLVWKYDGTKDSVMQVSRKAYLGCNTTEPIA EYKDGETKVKLERSGAFYFISGAEGHCKQGQKVIIVVLSSRKKTTVVFSPAPAPSPSDAMAPAVAPTSGGASSSFNLAAVSALFSGLGLVGLLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10003432 [exp]	0	1
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10043161 [exp]	4.2	0.8584
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	5.0	0.8777
					Lus10016909 [exp]	6.7	0.8254
AT1G67950			RNA-binding (RRM/RBD/RNP motif...		Lus10034580 [exp]	8.9	0.8300
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	15.1	0.8337
					Lus10001746 [exp]	22.7	0.7011
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10000506 [exp]	24.3	0.7875
					Lus10017380 [exp]	29.0	0.7151
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10032373 [exp]	31.7	0.7979
AT1G27990			unknown protein		Lus10015763 [exp]	34.9	0.7857

Compare expression of checked genes

Lus10003432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.