Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30620 655 / 0 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 625 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G44480 592 / 0 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 410 / 1e-144 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G10960 233 / 1e-73 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT1G64440 232 / 3e-73 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23920 224 / 3e-70 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 212 / 2e-65 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 204 / 2e-62 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT1G78570 89 / 6e-19 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013107 [exp] 793 / 0 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10038423 [exp] 691 / 0 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10023074 [exp] 229 / 2e-71 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10003875 [exp] 228 / 2e-71 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10001822 [exp] 221 / 5e-69 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10002246 [exp] 205 / 9e-63 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 206 / 1e-61 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10032394 [exp] 181 / 3e-54 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10042497 [exp] 97 / 1e-21 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459700 [exp] 688 / 0 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.011G156100 [exp] 682 / 0 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 610 / 0 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 605 / 0 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G090700 [exp] 229 / 3e-72 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G140900 [exp] 225 / 1e-70 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 218 / 8e-68 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.006G272700 [exp] 87 / 4e-18 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.002G146500 [exp] 82 / 7e-17 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.006G214000 [exp] 82 / 8e-17 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10003496 pacid=23156261 polypeptide=Lus10003496 locus=Lus10003496.g ID=Lus10003496.BGIv1.0 annot-version=v1.0 ATGCTAAATTTTGGAAGAACGAGGACGCAGTCTAGGTCCAATAGATCTGTGACTTTAGGAGGCATGGATTACCCAGATCCCAAAAGGAAGCGCAATTTTG CAGGAAAGATTGCTTTAGCGGCCATTTTGACGACTGTATGCATACTTGTGCTCAAGGGGTCCTCATTTAATCACACTACTCTGTTCTCTTTACGTGAACA AGGAATAACTCACGTCTTGGTGACCGGTGGTGCTGGCTATATTGGTTCACATGCTACATTACGTCTTCTGAAAGATGGTTATAGGGTGACCATAGTGGAC AACCTTTCACGTGGCAACATGGGTGCAGTTAAAATCTTACAAGAACTGTTTCCAGAGCCTGGGCGGCTTCAGTTTATCTATGCTGACTTGGGAGACGCTA AAGCTGTTAACAAAATATTTGCTGCGAATGCTTTTGATGCTGTGATGCATTTTGCAGCTGTTGCATATGTAGGGGAAAGCACAATGTATCCCCTTAATAC ATGTGCAACATATGGAGAACCTGAAAAGATGCCTATAACTGAAGAAACACCACAGGTCCCCATTAATCCATATGGAAAAGCCAAAAAGATGGCTGAAGAC ATCATCCTTGATTTTTCCAAGACATCTGACATGGCAGTTATGATTTTGAGATACTTCAACGTGATTGGAGCAGATCCGGAAGGCAGATTAGGGGAGGCTC CCAGGCCGGAGCTGCGAGAGCATGGACGGATTTCTGGTGCCTGCTTTGATGCAGCTCGTGGTATAATGCCAGGGTTGAAGGTAAAAGGAACAGACTATAA GACACATGATGGTACCTGCATAAGAGATTACATCGATGTCACTGATCTTGTGGACGCTCATGTGAAGGCCCTAGAAAAGGCTGAACCTGGTAAAGTGGGA ATCTACAATGTTGGCACAGGGAAAGGTAGATCAGTGAAAGAGTTTGTGGAGGCATGTAAGAAGGCAACTGGAGTAGAGATCAAAGTGGACTATCTACCTC GTAGACCTGGTGACTATGCTGAAGTGTACAGCGACCCATCTAAGATCAATTCTGAACTCAACTGGACGGCACGTTACACTGACCTGCAAGAGAGTTTGCA GATTGCGTGGAGATGGCAGAAGGCGCACCGAGATGGATATGGAACCCCTTCAGTGATGGCTTCTTAA
AA sequence Show only first row Show all	>Lus10003496 pacid=23156261 polypeptide=Lus10003496 locus=Lus10003496.g ID=Lus10003496.BGIv1.0 annot-version=v1.0 MLNFGRTRTQSRSNRSVTLGGMDYPDPKRKRNFAGKIALAAILTTVCILVLKGSSFNHTTLFSLREQGITHVLVTGGAGYIGSHATLRLLKDGYRVTIVD NLSRGNMGAVKILQELFPEPGRLQFIYADLGDAKAVNKIFAANAFDAVMHFAAVAYVGESTMYPLNTCATYGEPEKMPITEETPQVPINPYGKAKKMAED IILDFSKTSDMAVMILRYFNVIGADPEGRLGEAPRPELREHGRISGACFDAARGIMPGLKVKGTDYKTHDGTCIRDYIDVTDLVDAHVKALEKAEPGKVG IYNVGTGKGRSVKEFVEACKKATGVEIKVDYLPRRPGDYAEVYSDPSKINSELNWTARYTDLQESLQIAWRWQKAHRDGYGTPSVMAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	0	1
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	1.7	0.8628
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	2.0	0.8787
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	2.8	0.8744
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10001205 [exp]	4.9	0.8278
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	7.4	0.8520
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	7.7	0.8483
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	7.7	0.8221
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	7.9	0.8474
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042935 [exp]	10.5	0.7946
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	13.4	0.8569

Compare expression of checked genes

Lus10003496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.