Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20440 77 / 7e-17 SMB small nuclear ribonucleoprotein associated protein B (.1.2.3.4) AT5G44500 77 / 7e-17 Small nuclear ribonucleoprotein family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023386 [exp] 78 / 3e-17 AT5G44500 259 / 5e-87 Small nuclear ribonucleoprotein family protein (.1.2) Lus10038421 [exp] 78 / 4e-17 AT5G44500 263 / 2e-88 Small nuclear ribonucleoprotein family protein (.1.2) Lus10013108 [exp] 76 / 2e-16 AT5G44500 269 / 5e-91 Small nuclear ribonucleoprotein family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155700 [exp] 78 / 4e-17 AT4G20440 218 / 2e-70 small nuclear ribonucleoprotein associated protein B (.1.2.3.4) Potri.001G440100 [exp] 78 / 5e-17 AT4G20440 211 / 2e-67 small nuclear ribonucleoprotein associated protein B (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Lus10003498 pacid=23156264 polypeptide=Lus10003498 locus=Lus10003498.g ID=Lus10003498.BGIv1.0 annot-version=v1.0 ATGTCTATGTCGAAGAGTTCCAAGATGCTCCAGTACATCAACTACCGGATGCGGGTCACCATTCAGGACGGCCGGCAGCTGGTCGGTAAATTCATGGCTT TTGACCCACATATGCTGGTTCAAGCTCAACCTGGTCTCTCTGGACCTGTTCGAGGAGTCGGTGGCCCTGCTCCTGGAATGATGCAACCTCAAATATCTCG TCCTCCCGTCCCGAACATGTCTGCTCCTCCGATGAGCTATCCGGCTCCTGGAGCTCCACCACTCGGTGGTCCGCCCGTTATCCGGCCACCTGGACAGATG CCTCCTATGCAGTACCAAGGACAAGGACCGCCCATGACCCGCGGTCCTCCACCACAGGGAATGCCGCAATACGGTGCTAGGCCGCCACAGCAGGGGTATC CTATGCCTCCACAGTTCGCTCAGAGGCCGATGGGAGGGCCACCGCCACAGGGACCGCCGATGATGAGAGGGCCACCTGGTCCTCCAAGGCCCGGAATGCA AGCTCCACCACCGCCGCGTCCTGGTATGCCTCCTCCTGGTGGTATGTTTGGTCCTCCGCGTCCTGGAATGCCACCTCCGCCTAATCCTCAACAGCAACAG CAGCAGCAACAGAATCAACAGCAGTGA
AA sequence Show only first row Show all	>Lus10003498 pacid=23156264 polypeptide=Lus10003498 locus=Lus10003498.g ID=Lus10003498.BGIv1.0 annot-version=v1.0 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDPHMLVQAQPGLSGPVRGVGGPAPGMMQPQISRPPVPNMSAPPMSYPAPGAPPLGGPPVIRPPGQM PPMQYQGQGPPMTRGPPPQGMPQYGARPPQQGYPMPPQFAQRPMGGPPPQGPPMMRGPPGPPRPGMQAPPPPRPGMPPPGGMFGPPRPGMPPPPNPQQQQ QQQQNQQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	0	1
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	1.4	0.9828
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	1.7	0.9786
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	2.0	0.9808
AT5G02870			Ribosomal protein L4/L1 family...		Lus10014430 [exp]	4.9	0.9625
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	5.5	0.9678
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	5.7	0.9712
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	6.3	0.9708
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	7.3	0.9558
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	10.0	0.9604
AT3G54470			uridine 5'-monophosphate synth...		Lus10024166 [exp]	10.6	0.9570

Compare expression of checked genes

Lus10003498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.