Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33760 104 / 3e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G71450 86 / 6e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G11590 76 / 5e-17 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 76 / 9e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16280 73 / 1e-15 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G77200 72 / 2e-15 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G25820 71 / 4e-15 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT3G60490 71 / 6e-15 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 69 / 8e-15 AP2_ERF ATERF38 ERF family protein 38 (.1) AT4G32800 70 / 1e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002953 [exp] 265 / 2e-91 AT1G33760 143 / 2e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10041052 [exp] 145 / 5e-44 AT1G33760 143 / 3e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10006173 [exp] 86 / 4e-21 AT1G71450 167 / 4e-53 Integrase-type DNA-binding superfamily protein (.1) Lus10041050 [exp] 84 / 2e-20 AT1G71450 189 / 1e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10006172 [exp] 77 / 3e-18 AT1G33760 79 / 6e-19 Integrase-type DNA-binding superfamily protein (.1) Lus10034949 [exp] 74 / 9e-16 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10002801 [exp] 71 / 4e-15 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 71 / 4e-15 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10007799 [exp] 69 / 4e-15 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G101200 [exp] 117 / 2e-33 AT1G33760 149 / 1e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.019G075600 [exp] 111 / 5e-31 AT1G33760 147 / 6e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.003G054100 [exp] 107 / 3e-29 AT1G71450 144 / 8e-44 Integrase-type DNA-binding superfamily protein (.1) Potri.013G101100 [exp] 99 / 5e-26 AT1G71450 184 / 1e-59 Integrase-type DNA-binding superfamily protein (.1) Potri.001G181500 [exp] 95 / 1e-24 AT1G71450 184 / 8e-60 Integrase-type DNA-binding superfamily protein (.1) Potri.019G075500 [exp] 94 / 3e-24 AT1G71450 200 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 71 / 3e-15 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 70 / 1e-14 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.018G085700 [exp] 70 / 2e-14 AT4G32800 155 / 4e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.006G238600 [exp] 70 / 2e-14 AT5G11590 199 / 8e-64 TINY2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10003513 pacid=23157277 polypeptide=Lus10003513 locus=Lus10003513.g ID=Lus10003513.BGIv1.0 annot-version=v1.0 ATGGAGGAATGCGGCGGGGAAGGGCGGCGGAGGTACAGAGGTGTGAGGCAGAGGAGGTGGGGGAAGTGGGTGTCCGAAATCCGGGAGCCGGGGAAGAAGA CAAGGATATGGCTAGGGAGCTACGAGACGGCGGAGATGGCTGCAGCGGCCTACGACGCTGCCGCATTGTTCCTACGTGGAAGGGAGGGGCTCAACTTTCC GGAGTTAGCCGATGGTCTCCCCCGTCCGGCCAGCTCCAGCGCGGAGGACGTCCAGACGGCGGCGCAACTGGCGGCGGCCCGGATGGTTAATGGCGGGTCA AATAACTTAGGTGGTGGGTTGAGGCCGGTAAGGGTTGGGTTGACTCCCGGTCAAATTCAGGCGATTAATGAGACGCCGATGGATTCTCCGAATTACATGT ATTGGATGGAGCTTGCTGCCGGAGCTCTGCTGTCGCCGGGAAAGCAAGAGTACAACGGTGCCGTTTCGATGGATTTGGGTGATGTTATTGACGGCTGTGA TTTCAGTGGTTTGGAGGAAATCATGGAAATGCATCATTACCAGCCGTCCATTTGGGATTACTACTCATAA
AA sequence Show only first row Show all	>Lus10003513 pacid=23157277 polypeptide=Lus10003513 locus=Lus10003513.g ID=Lus10003513.BGIv1.0 annot-version=v1.0 MEECGGEGRRRYRGVRQRRWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALFLRGREGLNFPELADGLPRPASSSAEDVQTAAQLAAARMVNGGS NNLGGGLRPVRVGLTPGQIQAINETPMDSPNYMYWMELAAGALLSPGKQEYNGAVSMDLGDVIDGCDFSGLEEIMEMHHYQPSIWDYYS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003513 [exp]	0	1
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10002953 [exp]	1.0	0.9665
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10020247 [exp]	1.4	0.9316
					Lus10028607 [exp]	3.5	0.9127
AT1G79910			Regulator of Vps4 activity in ...		Lus10035885 [exp]	4.0	0.8839
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10035706 [exp]	7.7	0.7997
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	9.2	0.8565
AT2G22795			unknown protein		Lus10028240 [exp]	9.5	0.8374
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	11.2	0.8473
AT4G23900			Nucleoside diphosphate kinase ...		Lus10023076 [exp]	13.0	0.7775
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	15.0	0.8447

Compare expression of checked genes

Lus10003513 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.