Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 192 / 4e-55 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G46730 129 / 3e-33 NB-ARC domain-containing disease resistance protein (.1) AT1G10920 127 / 1e-32 LOV1 NB-ARC domain-containing disease resistance protein (.1.2) AT3G46530 124 / 1e-31 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G53350 124 / 3e-31 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 122 / 6e-31 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 122 / 1e-30 NB-ARC domain-containing disease resistance protein (.1) AT5G35450 120 / 5e-30 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46710 118 / 2e-29 NB-ARC domain-containing disease resistance protein (.1) AT5G48620 118 / 2e-29 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002945 [exp] 458 / 5e-155 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 438 / 2e-147 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 351 / 8e-114 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 344 / 4e-111 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 306 / 8e-97 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 262 / 2e-80 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 187 / 2e-54 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 188 / 1e-53 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003094 [exp] 174 / 2e-51 AT3G07040 169 / 4e-46 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 190 / 2e-54 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G008666 [exp] 172 / 5e-52 AT3G07040 195 / 4e-57 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 178 / 3e-50 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 177 / 7e-50 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 172 / 6e-48 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 166 / 6e-46 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 166 / 1e-45 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 165 / 1e-45 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134425 [exp] 162 / 5e-45 AT3G07040 347 / 6e-107 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 162 / 9e-45 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10003521 pacid=23157264 polypeptide=Lus10003521 locus=Lus10003521.g ID=Lus10003521.BGIv1.0 annot-version=v1.0 ATGGACGATGTGGCTTCCCATTCGTCTTCTGAAGTTGGAAGCCATGTCTACCATGTTAAGCCACTCAACAGGGACAAAGCTTGGGACCTTTTTACCATGA GTGCTTTCTCTTCAAAGAGTTCCAACAAGTGTCCTCCTGAGCTTCAAGCTATAGCCAATGAGTTAGTGGAGAAATGTGAAGGTTTGCCTCTGGCCATTGC TTCAGTAGGTGGACTCTTGGCTACGAAACCAAGCTCAATAGGGGTGTGGACGACGGTGTTTAAGAATCTGCAGTGGGAGTTGAACAACAATCAAATGCTT CAGCCTATAAAAAGCATACTTCTTTTGAGCTACAACGATCTTCCGTATAGGTTGAAGTATTGCTTCCTGTACTTTGCCTTGTTTCCGGAGGATTACAAGA TTTGGTGTGATAAGCTTGTTAGGCTGTGGATGGCTGAAGGATTTGTGGAAGCGAATGACAACGGTGTGTCACCTGAAGATGTTGGAATGGGATACATTAG AGAATTGATTGGTCGGAACATGTTCCAAGCTGTGAGTTGGGACATGTTTGGTAACCATGGCAAGTGTAAGATGCATGATTTGTGTAGAGAGATTGCTCTT ACAATATCAAAGCAAGAGAAGTTCTGCTCAGTGTATGATTATGGGAATCGTCAAACACTGCCTAAAGAAGCTGAAGAAGATGGTTCAGTCGTACAACTCG AGATCACAAACTTGGAAGGACAAGCTCAAATGGAGGACCTGTGCTCCTCACTTCAAGGTATGCTTTTGCTAAGATGGTTAGTTGTGATGGCAAGCAATGG GGATGAACTCCTCCAAATGGATTCACTTAATGAATCCACGACTCCTCCACTTCAACTTCTTGAATATCTCATCCTATGTGGGAAACTAAAGAGCTTCCCA GACTGGATCCGATCGCTTCACAGCCTGACAATCATCTGA
AA sequence Show only first row Show all	>Lus10003521 pacid=23157264 polypeptide=Lus10003521 locus=Lus10003521.g ID=Lus10003521.BGIv1.0 annot-version=v1.0 MDDVASHSSSEVGSHVYHVKPLNRDKAWDLFTMSAFSSKSSNKCPPELQAIANELVEKCEGLPLAIASVGGLLATKPSSIGVWTTVFKNLQWELNNNQML QPIKSILLLSYNDLPYRLKYCFLYFALFPEDYKIWCDKLVRLWMAEGFVEANDNGVSPEDVGMGYIRELIGRNMFQAVSWDMFGNHGKCKMHDLCREIAL TISKQEKFCSVYDYGNRQTLPKEAEEDGSVVQLEITNLEGQAQMEDLCSSLQGMLLLRWLVVMASNGDELLQMDSLNESTTPPLQLLEYLILCGKLKSFP DWIRSLHSLTII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003521 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003522 [exp]	1.0	0.9029
AT1G76405			unknown protein		Lus10025160 [exp]	5.2	0.8431
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	8.5	0.8769
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Lus10021337 [exp]	8.9	0.8471
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040736 [exp]	15.1	0.8692
AT1G19240			unknown protein		Lus10034891 [exp]	15.3	0.7727
AT5G48830			unknown protein		Lus10038165 [exp]	22.3	0.8739
AT1G72690			unknown protein		Lus10008389 [exp]	24.0	0.8232
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10020901 [exp]	27.4	0.8426
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	31.2	0.8663

Compare expression of checked genes

Lus10003521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.