Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54220 411 / 7e-137 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 336 / 5e-111 GRAS GRAS family transcription factor (.1) AT1G63100 221 / 4e-64 GRAS GRAS family transcription factor (.1) AT1G14920 209 / 8e-61 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G66350 199 / 2e-57 GRAS RGL1 RGA-like 1 (.1) AT2G01570 201 / 3e-57 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G03450 198 / 2e-56 GRAS RGL2 RGA-like 2 (.1) AT5G17490 183 / 3e-51 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G04890 181 / 3e-51 GRAS SCL21 SCARECROW-like 21 (.1) AT5G66770 182 / 1e-50 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033912 [exp] 930 / 0 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 375 / 3e-122 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10016496 [exp] 373 / 2e-121 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10041540 [exp] 245 / 6e-73 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 245 / 3e-72 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10006322 [exp] 219 / 3e-64 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10010462 [exp] 215 / 1e-63 AT5G41920 327 / 2e-108 GRAS family transcription factor (.1) Lus10029592 [exp] 219 / 2e-63 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10017626 [exp] 209 / 3e-60 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226800 [exp] 679 / 0 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.002G036100 [exp] 676 / 0 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.016G143833 [exp] 403 / 1e-131 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G114200 [exp] 399 / 4e-130 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G021400 [exp] 335 / 4e-110 AT5G41920 509 / 2e-180 GRAS family transcription factor (.1) Potri.016G018900 [exp] 334 / 8e-110 AT5G41920 506 / 5e-179 GRAS family transcription factor (.1) Potri.001G326000 [exp] 242 / 9e-72 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 222 / 4e-65 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G109400 [exp] 218 / 4e-63 AT1G63100 711 / 0.0 GRAS family transcription factor (.1) Potri.003G122400 [exp] 218 / 7e-63 AT1G63100 696 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10003540 pacid=23155646 polypeptide=Lus10003540 locus=Lus10003540.g ID=Lus10003540.BGIv1.0 annot-version=v1.0 ATGCAACAACAACCCCACGAGCCATGGGACTACTCCTCCGTTAGCTTCCCATCCTCCGCCGTCAAGCCCGCCGCAATCGAAGACGACAACAACAACAACC TCCGTGGAGCCGCCGCCGTCGTCAACTTAGAGAGAAACGAGCTCTCCGAATGGGTTGAACACGTCACCAAACAACTCATCGATGACTTGCCCCTCACGCC ATCCGATCATCATCATCATCACCAAGCTCCGGGCTTCCACCACCAGCCTCCTCCTTTCGTGGATGAAGACCATTTCCGGCCGCGGAAAGTCATGCGAAGG ACTCATCAGTACCCAAGTGATCATGATTGTCACCAGGCCGACAACAGTATTTCCTCCGATAGCTATAACAACAACAACAACAACAACGACCAAGATCGTC TTAACTACCACCACATAAACAACAACCCTAGTAGTAGTATTGGAGTCTCCGAAGCCAACACATCGTCCTCCATCGCGCTACTGATGAGCAAGGGCGATGA AGAGAGCTTGGAGCTGATCTCCAAGCTCTTCGAGATCGCTGTAGCGATCTCTGTTGAAAATCTAGGGGAGGCTCATGAGATGTTGCTCGAGCTGACCCAT GTGGCCTCCCCTTATAGTTCGTCTTGTGCAGAACGAGTCGTGGCATACTTCGCTAGGGCAATGTCCAGTCGAGTGATGAATTCGTGGCTGGGCATTTGTT CCCCATTGACAAACCACCGGACCATCCATGCTGCTTTCCAGGTATTCAACAATGTCTCCCCTTTCGTAAAGTTCGCACACTTTACCTCGAACCAAGCCAT CTTGGAAGCCTTTCAACGACGTGACAGGGTCCACATCATCGATCTGGATATCATGCAGGGCCTCCAGTGGCCCGCACTCTTTCACATCCTTGCCACCCGC GCTGGGGGCCCACCTCACGTGCGGATGACAGGGATGGGGTCCTCCATGGACCTCCTTGTCGAGACAGGAAAACAACTCTCGAATTTTGCCAGAAGGCTAG GGCTATCCTTCGAGTTCCACCCGATCGCCAAGAAGTTTGGAGAAGTCGACATATCCATGGTGCCCTTAAGGAGAGGAGAGACCCTCGCAGTACATTGGAT GCAACACTCGTTATACGACGCAGTAGGGACAGACTGGAAGGCCATGAGACTGCTCGAAGAGCTGGCACCCAGGGTCGTGACACTAGTCGAGCAGGACGTA TCCAATGGGGCCGGTTCATTTCTAGACCGGTTTGTGGGGTCTCTACATTACTACTCCACCATGTTCGACTCCCTAGGGGCGTTTCTAGCAGCAGACGATC CGGGGAGGAACAAAGTGGAGCAATGTCTGTTCTATAGGGAGATCAACAACGTGATGGCAATAGGTGGGCCGGGAAGGAGTGGGGAGGAGAAGTTCAAACA CTGGAGGAGCGAGCTCAACAGGAGCTCGTTCCTGCAGATACCGATGAGTGGGAACTCCATGGCTCAGGCTCAGCTCATACTAAACATGTTCCCTGCGATT AACGGGTATAGCCTTGTTCAAGGGGATGGCACGTTGAGACTTGGGTGGAAAGATACTAGCTTGTTCACCGCGTCGGCTTGGACGTCGCCGGCGGCTGCTT CAAGATAA
AA sequence Show only first row Show all	>Lus10003540 pacid=23155646 polypeptide=Lus10003540 locus=Lus10003540.g ID=Lus10003540.BGIv1.0 annot-version=v1.0 MQQQPHEPWDYSSVSFPSSAVKPAAIEDDNNNNLRGAAAVVNLERNELSEWVEHVTKQLIDDLPLTPSDHHHHHQAPGFHHQPPPFVDEDHFRPRKVMRR THQYPSDHDCHQADNSISSDSYNNNNNNNDQDRLNYHHINNNPSSSIGVSEANTSSSIALLMSKGDEESLELISKLFEIAVAISVENLGEAHEMLLELTH VASPYSSSCAERVVAYFARAMSSRVMNSWLGICSPLTNHRTIHAAFQVFNNVSPFVKFAHFTSNQAILEAFQRRDRVHIIDLDIMQGLQWPALFHILATR AGGPPHVRMTGMGSSMDLLVETGKQLSNFARRLGLSFEFHPIAKKFGEVDISMVPLRRGETLAVHWMQHSLYDAVGTDWKAMRLLEELAPRVVTLVEQDV SNGAGSFLDRFVGSLHYYSTMFDSLGAFLAADDPGRNKVEQCLFYREINNVMAIGGPGRSGEEKFKHWRSELNRSSFLQIPMSGNSMAQAQLILNMFPAI NGYSLVQGDGTLRLGWKDTSLFTASAWTSPAAASR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10003540 [exp]	0	1
					Lus10025106 [exp]	1.0	0.8641
					Lus10004308 [exp]	4.2	0.8363
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Lus10042245 [exp]	7.4	0.7749
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004347 [exp]	13.1	0.7790
AT2G23630		SKS16	SKU5 similar 16 (.1)		Lus10000837 [exp]	22.0	0.8420
					Lus10025590 [exp]	23.2	0.7301
AT4G33590			unknown protein		Lus10001351 [exp]	27.1	0.7862
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10023890 [exp]	33.7	0.7433
AT5G17630			Nucleotide/sugar transporter f...		Lus10004312 [exp]	37.3	0.7275
AT3G08030			Protein of unknown function, D...		Lus10029503 [exp]	38.6	0.7903

Compare expression of checked genes

Lus10003540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.