Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31180 221 / 2e-71 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G23250 221 / 4e-71 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT1G06180 220 / 5e-71 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT3G61250 204 / 2e-64 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G21440 206 / 3e-64 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G16770 203 / 3e-63 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 201 / 8e-63 MYB ATMYB107 myb domain protein 107 (.1) AT4G05100 199 / 5e-62 MYB ATMYB74 myb domain protein 74 (.1) AT4G28110 196 / 2e-61 MYB ATMYB41 myb domain protein 41 (.1) AT1G79180 196 / 4e-61 MYB ATMYB63 myb domain protein 63 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033889 [exp] 445 / 6e-159 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10021871 [exp] 214 / 3e-69 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10041145 [exp] 214 / 1e-68 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2) Lus10021185 [exp] 212 / 1e-67 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10011820 [exp] 210 / 6e-67 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10022021 [exp] 205 / 8e-66 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10014784 [exp] 206 / 3e-65 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10030378 [exp] 206 / 6e-65 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10042561 [exp] 201 / 2e-64 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038500 [exp] 254 / 3e-84 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G224100 [exp] 254 / 5e-84 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.008G166700 [exp] 226 / 7e-73 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.019G018200 [exp] 214 / 4e-69 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.011G041600 [exp] 206 / 5e-64 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 206 / 6e-64 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.002G157600 [exp] 204 / 6e-64 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.007G093900 [exp] 204 / 7e-64 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.019G118200 [exp] 204 / 2e-63 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.005G074500 [exp] 203 / 3e-63 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10003557 pacid=23155664 polypeptide=Lus10003557 locus=Lus10003557.g ID=Lus10003557.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCTCCATGCTGTGAGAAGATGGGTCTGAAGAAGGGACCTTGGACCTCTGAAGAAGACCATATCCTCACCAATTACATTCAGCTATACGGCC ACGGCAACTGGCGAGCCCTCCCCAAGCTTGCCGGATTGTTGAGGTGCGGGAAGAGTTGCAGGCTGCGATGGACAAATTACTTGAGGCCTGACATCAAACG AGGAAATTTCACCCGTGAAGAGGAAGACACAATCATCGAATTGCACAACATGTTAGGAAACAGGTGGTCGACGATTGCGGCGAAATTGCCGGGGCGTACG GACAACGAGATTAAAAATGTATGGCACACCCACTTGAAGAAGAGGGCGATGCTGATGACAACGTCGCCGACGAAGCAAAACGACGATCAGCAGAATAATC CACTGCCTCATCCGGTGACTAATAAGCGGAGATCACCCTCCGGTAAGAAAACCAAGAGCATCAGCAGCATTATTAAATCGGATCAGGCGGCAGGGGAACC TGCAGATTCAACGGCGGTGCCGGTACCGGTGGAGTACTGCTCCAGCGACGACGCGTCATCACTGACGACAGCGACGACGGGGGAGAACAACGATGCGGTG AAGGCGGAGGATGTTTCGTCGAGGGAGGAATATTTGAATAACGAGGAAATGGACGAGAGTTTCTGGTCGGAGGTGTTGTCGGCGGAGAATTCGAGCAGCG CGGTTGAACCGGAACTGGGATCGGGGTTGTTTCGGTTTGATTCGTTGGTAAATAGTAGTGGTACTGTGGGCGGCGGCGATGACCAGGAAGGAGAGGCGGC TGCAGCGGCAGCCCTGGTGGGGGATTCAAACGTGGACTATAGTAGCATGGATTTTTGGTACAACTTTTTGACTGGGGATGGGGAATTATCAGCGCTTCCA TCAATTTGA
AA sequence Show only first row Show all	>Lus10003557 pacid=23155664 polypeptide=Lus10003557 locus=Lus10003557.g ID=Lus10003557.BGIv1.0 annot-version=v1.0 MGRAPCCEKMGLKKGPWTSEEDHILTNYIQLYGHGNWRALPKLAGLLRCGKSCRLRWTNYLRPDIKRGNFTREEEDTIIELHNMLGNRWSTIAAKLPGRT DNEIKNVWHTHLKKRAMLMTTSPTKQNDDQQNNPLPHPVTNKRRSPSGKKTKSISSIIKSDQAAGEPADSTAVPVPVEYCSSDDASSLTTATTGENNDAV KAEDVSSREEYLNNEEMDESFWSEVLSAENSSSAVEPELGSGLFRFDSLVNSSGTVGGGDDQEGEAAAAAALVGDSNVDYSSMDFWYNFLTGDGELSALP SI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	0	1
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	1.0	0.9481
AT5G46250			RNA-binding protein (.1.2.3)		Lus10038494 [exp]	2.0	0.9396
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031196 [exp]	2.2	0.9336
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10008417 [exp]	2.4	0.9328
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	2.8	0.9194
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	2.8	0.9353
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	3.7	0.9215
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10009183 [exp]	6.9	0.8957
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	7.2	0.9106
AT1G65800		ARK2	receptor kinase 2 (.1)		Lus10007602 [exp]	7.7	0.9067

Compare expression of checked genes

Lus10003557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.