Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23240 145 / 6e-43 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT2G31230 130 / 8e-37 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1) AT1G06160 108 / 1e-28 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT5G43410 103 / 9e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G18450 105 / 1e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 101 / 4e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17500 99 / 1e-24 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47230 99 / 2e-24 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G47220 98 / 2e-24 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT2G44840 97 / 2e-24 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033885 [exp] 289 / 6e-99 AT3G23240 142 / 7e-42 ethylene response factor 1 (.1) Lus10027469 [exp] 222 / 4e-73 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1) Lus10014655 [exp] 148 / 9e-44 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10006579 [exp] 141 / 4e-41 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10021193 [exp] 127 / 6e-36 AT3G23240 209 / 2e-68 ethylene response factor 1 (.1) Lus10011829 [exp] 126 / 3e-35 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1) Lus10022015 [exp] 123 / 2e-34 AT3G23240 176 / 1e-55 ethylene response factor 1 (.1) Lus10042557 [exp] 119 / 2e-33 AT3G23240 155 / 7e-48 ethylene response factor 1 (.1) Lus10025430 [exp] 105 / 5e-28 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223300 [exp] 159 / 3e-48 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.002G039000 [exp] 145 / 7e-43 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.013G045200 [exp] 138 / 2e-40 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.019G014409 [exp] 133 / 4e-38 AT3G23240 161 / 1e-49 ethylene response factor 1 (.1) Potri.005G223200 [exp] 127 / 8e-36 AT3G23240 165 / 4e-51 ethylene response factor 1 (.1) Potri.002G039100 [exp] 125 / 2e-35 AT3G23240 147 / 3e-44 ethylene response factor 1 (.1) Potri.008G166200 [exp] 119 / 5e-33 AT3G23240 202 / 1e-65 ethylene response factor 1 (.1) Potri.004G051800 [exp] 120 / 1e-32 AT4G18450 127 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.010G072300 [exp] 117 / 4e-32 AT3G23240 201 / 2e-65 ethylene response factor 1 (.1) Potri.004G051700 [exp] 110 / 6e-30 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10003562 pacid=23155653 polypeptide=Lus10003562 locus=Lus10003562.g ID=Lus10003562.BGIv1.0 annot-version=v1.0 ATGTTGGATCCTTACTACAACTACTACTCCTCCTCCTCCTCCCCCTCGCCGCTAGACTGCCTCTCTTCTCCGCCGCCGCAAACCCATTACTGGAGCCCAT ACGGCGGAGAACTACAACAACAAGAAGAAGAACCAAGCAACTTCCTCCTCTGCCCTCCATCAAACTCAACTTCCTCTTCCGATCCTTGCTCCCACGCGCT GCCGCCGCCAGTCGAAGAAGCAACTTCCTCCTCCGGCAAGAAGAAGAAGCAGACAAAGAACAACAACAGCACTACTACTGTTTACAAGTCTGCGTACAGG GGGGTGAGGACTCGGCCGTGGGGGAAGTACGCGGCTGAGATCCGTGACTCGACGAGGCACGGGGTGAGGGTGTGGTTGGGGACTTTTGACACACCTGAAG AGGCGGCGCTAGCCTACGATCAGGCGGCGCTGTCTCTCCAGGGTTCGAGGGCAGTGCTCAACTTCCCTGCAGAGGAAGTGAGTCAATCTCTCGAGGAGAT CGGGTGTGGACTTGGGAAATGTTCCTCTCCGGCTGAGGCTCTTAAGCAGACGCATTATGTTAAGCGAAAGGCCCTCACCAGGAAGAGGAAAGGTAAGCAA AGTGTTGTTGACCAGGTTGACCTTGAGGTAACGAATTCGAGTCCAGTAATAACGAGGGAAGAAGTAGTCGAATTTGAGGATTTGGGTTCTGCTTTTTTGG AGCAACTTCTATTTGAGAGCTCAACTACTAATTATTGA
AA sequence Show only first row Show all	>Lus10003562 pacid=23155653 polypeptide=Lus10003562 locus=Lus10003562.g ID=Lus10003562.BGIv1.0 annot-version=v1.0 MLDPYYNYYSSSSSPSPLDCLSSPPPQTHYWSPYGGELQQQEEEPSNFLLCPPSNSTSSSDPCSHALPPPVEEATSSSGKKKKQTKNNNSTTTVYKSAYR GVRTRPWGKYAAEIRDSTRHGVRVWLGTFDTPEEAALAYDQAALSLQGSRAVLNFPAEEVSQSLEEIGCGLGKCSSPAEALKQTHYVKRKALTRKRKGKQ SVVDQVDLEVTNSSPVITREEVVEFEDLGSAFLEQLLFESSTTNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10003562 [exp]	0	1
AT3G52710			unknown protein		Lus10014206 [exp]	2.4	0.8246
AT3G08670			unknown protein		Lus10025209 [exp]	12.6	0.8245
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10029541 [exp]	14.3	0.7757
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035655 [exp]	22.2	0.8028
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	22.8	0.7834
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	23.9	0.8175
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10002870 [exp]	24.8	0.8022
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10012843 [exp]	26.5	0.7757
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	32.2	0.7467
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	37.5	0.7987

Compare expression of checked genes

Lus10003562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.