Plant FIBer expression Database

Lus10003564 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45380 754 / 0 ATDUR3 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037255
[exp]
864 / 0 AT5G45380 1095 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Lus10033882
[exp]
583 / 0 AT5G45380 790 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Lus10000112
[exp]
198 / 7e-62 AT5G45380 152 / 4e-44 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G104000
[exp]
823 / 0 AT5G45380 1028 / 0.0 DEGRADATION OF UREA 3, solute:sodium symporters;urea transmembrane transporters (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF00474 SSF Sodium:solute symporter family
Representative CDS sequence
>Lus10003564 pacid=23155667 polypeptide=Lus10003564 locus=Lus10003564.g ID=Lus10003564.BGIv1.0 annot-version=v1.0
ATGGCGTCAACTCAGTCAAAGTGTCCGCCTTTCGACTTCTCTGCTAAATACTACTACACCAATGGCGGAGGGTGCATTCGGCAGAACAGCTTCTTTGACG
GGAAACCAATACTAAGTCAAGGAGTAGGCTACTCTCTCATCCTCGGCTGCGGCGCCTTTTTCGCTCTCTTCACTTCTTTTCTGGTGTGGGTGGAGAAAAG
ATACTTAGGGTCCCGCCACACTTCAGAATGGTTCAACACCGCCGGAAGAAACGTCAAAACTGGCCTTATTGCCACTGTTATTGTCTCCCAGTGGACGTCG
GCAGCTAAAATCTTGCAAAGCTCCAATGTGGCATGGCAATATGGGGTGAGTGGACCATTCTGGTATACGAGTGGGGTTACCATTCAGGTTCTGCTGTTTG
GAGTAATTGCCATAGAGATGAAGAGAAAGGCTCCACATGCACATGCACTTTGTGAGATTGTCAAAGCGAGATGGGGAACTCATGCCCACAGTATGTTCCT
CTTCTTCTGTTTCATGACCAACATCATCTTCACTGCAATGCTACTCCTTGGAGGCTCAGCAGTCGTCAATGCACTCACCGGAGTTAATATCTACGCAGCC
AGTTTCCTCGTCCCTCTTGGTGTCATTCTCTACACTCTAGCCGGTGGCCTCAAGGCCACTTTCTTAGCCAGCTACATCCACTCTCTCATTGTTCATGTGG
CTCTAATCGTATTTGTCTACTTAGTCTACACATCCAGCAGTGAACTTGGCAGTCCGGAAATCCTGTATCGTCGCTTGTTACATGTTACAAGCAAATCCAG
AGTCTGCCAAGAGCCAATCTCTCACGCTGGCCAAACATGCGGCCCTGTCGAAGAAAACTACAACGGCTCTTACCTCACCATGCTCAGTCCTGGAGGCCTC
GTCTTTGGTATCATCAACATTGTTGGCAACTTTTGCGCAGTTTTTGTCGACAATGGGTATTGGGTGAGTGCCATAGCTGCAAGGCCTTCCTCAACTCACA
AGGGCTATCTGTTGGGAGGCTTAGTATGGTTTGCTGTCCCTTTCTCCCTGGCAACTTCACTGGGGCTAGGAGCTGTTGCACTGGTCGTCCCCATAACTCA
GACAGAAGCCAGTCGTGGACTTGTTCCTGCTGCCACTGCTACTGCCTTGATGGGAAAATCAGGATCTGTTCTTCTTCTCACCATGCTTTTCATGGCTGTG
AGTTCTGCTGGATCATCTGAACTAATTGCAGTGTCCTCGTTGTGCACGTACGATATCTACCGCACCTACATTAATCCTAATGCGAGGGGGAAAAAGATCC
TACTAGTATCAAGGGCAGTGGTGTTGTGTTTTGGATGCTTCATGGGTTTGCTGGCTGTAATACTGAACAAGGCTGGAGTTTCATTAGGTTGGATGTATCT
AGCCATGGGAATGTTGATTGGCTCAGCTGTTATCCCAATTGCTTTCATGCTCCTTTGGAGGAAAGCCAACGCAATAGGTGCCATACTGGGAACTTTAATA
GGCTGCCTTCTGGGAATAGCCACCTGA
AA sequence
>Lus10003564 pacid=23155667 polypeptide=Lus10003564 locus=Lus10003564.g ID=Lus10003564.BGIv1.0 annot-version=v1.0
MASTQSKCPPFDFSAKYYYTNGGGCIRQNSFFDGKPILSQGVGYSLILGCGAFFALFTSFLVWVEKRYLGSRHTSEWFNTAGRNVKTGLIATVIVSQWTS
AAKILQSSNVAWQYGVSGPFWYTSGVTIQVLLFGVIAIEMKRKAPHAHALCEIVKARWGTHAHSMFLFFCFMTNIIFTAMLLLGGSAVVNALTGVNIYAA
SFLVPLGVILYTLAGGLKATFLASYIHSLIVHVALIVFVYLVYTSSSELGSPEILYRRLLHVTSKSRVCQEPISHAGQTCGPVEENYNGSYLTMLSPGGL
VFGIINIVGNFCAVFVDNGYWVSAIAARPSSTHKGYLLGGLVWFAVPFSLATSLGLGAVALVVPITQTEASRGLVPAATATALMGKSGSVLLLTMLFMAV
SSAGSSELIAVSSLCTYDIYRTYINPNARGKKILLVSRAVVLCFGCFMGLLAVILNKAGVSLGWMYLAMGMLIGSAVIPIAFMLLWRKANAIGAILGTLI
GCLLGIAT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G45380 ATDUR3 DEGRADATION OF UREA 3, solute:... Lus10003564
[exp]
0 1
AT5G28300 Trihelix Duplicated homeodomain-like su... Lus10015924
[exp]
3.5 0.8255
AT4G11970 YTH family protein (.1.2.3) Lus10007048
[exp]
8.9 0.8390
AT5G03150 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger... Lus10026497
[exp]
13.8 0.7284
AT4G00110 GAE3 UDP-D-glucuronate 4-epimerase ... Lus10031127
[exp]
17.0 0.8068
Lus10039807
[exp]
19.2 0.7912
AT3G57800 bHLH bHLH060 basic helix-loop-helix (bHLH) ... Lus10042349
[exp]
20.3 0.8269
AT1G31040 PLATZ transcription factor fam... Lus10036226
[exp]
20.4 0.8158
AT2G05990 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDU... Lus10016274
[exp]
23.1 0.8330
AT2G38530 cdf3, LP2, LTP2 cell growth defect factor-3, l... Lus10025152
[exp]
23.9 0.7834
AT4G26150 GATA GATA22, CGA1, G... GNC-LIKE, GATA TRANSCRIPTION F... Lus10006000
[exp]
31.2 0.8119

Lus10003564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.