Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 306 / 3e-89 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 237 / 2e-64 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 162 / 6e-41 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 144 / 7e-35 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G53350 138 / 5e-33 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 128 / 4e-30 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 126 / 2e-29 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 120 / 1e-27 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G58390 120 / 1e-27 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G10920 118 / 5e-27 LOV1 NB-ARC domain-containing disease resistance protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002609 [exp] 1177 / 0 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 1129 / 0 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 1062 / 0 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 1054 / 0 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 873 / 0 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10029705 [exp] 452 / 3e-152 AT3G14460 112 / 5e-27 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10032782 [exp] 312 / 1e-100 AT3G14460 57 / 1e-09 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 328 / 2e-95 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 328 / 3e-95 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G121876 [exp] 552 / 0 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 531 / 2e-174 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 528 / 2e-173 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123500 [exp] 526 / 1e-172 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.015G121800 [exp] 525 / 2e-171 AT3G14470 377 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 524 / 2e-171 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121900 [exp] 508 / 3e-165 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122900 [exp] 497 / 9e-162 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121851 [exp] 464 / 2e-150 AT3G14470 348 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 464 / 1e-149 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10003571 pacid=23165479 polypeptide=Lus10003571 locus=Lus10003571.g ID=Lus10003571.BGIv1.0 annot-version=v1.0 ATGGCTACTCAGATCGTTTCCAAACTCATCGGCCAGCTGGGATCCGTCCTGACTGAAGAGCTGACGCGAAGAGGGAAGCTGGTCGTAGGTGCGGAGAAAG ATGTGAAGAAGCTGGCATCCACTTTCTCTTCCATTGAAGCTCTTTTGCTTGATGCTGAAGAGAGGCAGCTTACTGATAAAGCCGTCGAAGACTGGCTGAC GAAACTCAAGAACGTGTGCTACGAGATCGACGATGCGCTGGACAAGTGGAGAACCGAGATCCTCAAGCGTCAGATTGAGGATGACAACAACAGCGACGAC TGTTGTTGGTTGGAGAAGAAACTGCTCGAAATCTCCAACATTCTTAAACGAGTATGTCCATTTCTTCCTACTTACTGTTTCTCTCCTGATGAGATTGGTG TTCGATATGATATTGCATCTGTGATCGAGGAATTGTATGAAAAGGTTGACCAGATAGATAAAGATAAAAATGTGTTCGGTTTTACTGCTAAGCCAGCTGT GTTGTACAAAAGTCTGCCAACTAGCTCCATTATCAAATTCTCGGATGTGAAAGGCAGAGAGGAAGAGACAGAGTTGCTAAAAGAAAAGTTGCTACAAATT AGTAGTGATGTTCAGAGTATCTCCATTCAAGGTGCTGGTGGGCTTGGGAAAACCACATTAGCAAAACTGCTCTACAATGATAAAGTTGTGGGAGATCATT TCGACAAGAGAACTTGGGTTTGTGTGTCCGACACTTTTGACCCAACAACGGTCGCTAAAACCATATTTGCATCTCTCTTTGGTTGTGCTCCGGAAATTAA CACATTGTCATTCATGTTGGAGAAAATAAGTGAGAGGACTAAAGGCATGAGGTTCCTTCTAGTTCTTGACGACGTGTGGGAAGATAGTCGGAGCAAATGG GAAGAACTAAGGAATGCTCTCTCGTGCAACTCACCCGGGAGCAAGATTTTGGTGACGACACGTAAAGGAGAGGTTTCTCGTGCATTAGGCTGCATTGAGG ATGATGTGCTTCTTATTGGAAAGGTGTCTGAGGATGTATGTCGAGCTATTTTTACCCAGGTTGCATTTAACGGGTGGAATGCAAATGAGAAAGAACGTGT AGAAAGTTTATGCATAGATGCTGTTGCAAAATGTGATGGTTTGCCGCTAGCTGCAAAAGTATTGGGAGGGGTCATGCAGTCCAAGAAAAGTAAGAGTGAA TGGGTTAAGGTCCTAAATAGTGAAATGTGGCACTTGGAGGAAGTTAGAAAAGAAGTTTTTCGTCCTTTAGCATTGAGTTACTATGACTTGACTCCTCAGC TTAGACGCTGTTTCCAAGTTTGTGCAGTCTTTCCCAAGGATTATGAGATGGAGAAGGATGAATTAATCAAGTTGTGGATATCTCAAGGTTTTGTTGGAGC AAGTGGAACTCAAGAAGTGGAGGATACTGGCGAAGAGTATTTCCAAATCTTAGCTGCGCGTTCCTTCTTTCAAGATTTTCGAACAAATAAAGAAGTTTAC GAAACGGAGAAAAGATACTGTAAGATGCATGATTTTGTGTCCGACTTCGCGCAGATGCTAAGTAAGGGTGAATGTGTTAGCATGACAATGGAGAACTGGA GAAATGTCACTGCCGTTTCCATCAACGACAGTGTGGTTCGTAATTTGAGGATAGATTGGGACTCGAGGTGGAGTAATCTTACCATCAGTAGTTCCCACTT CTTTTTGATGGAGGACTTACGTAGTTTCATGGCAAATAGTTTTAATGGCATGGAACTTGATGTGTGGGGTCATTTGTGTGGCATAAGATCCTTAGTTCTC ACTCATAGTGAGCTCAAGAAAATTCCATCAACAATAAATCAATTGATCCATATGAGGCATTTGGATTTGTCCAATAATAGATTATTGGAAGAGTTGTGTG AGGAAATATGCGAGCTTTACAACTTATGGACACTTACCATCAACTGGTGTTATCAATTGAAGAAGCTACCTCTGGGAATGGGGAATAAACTAGTGAATCT AAAGCATATCGAGAACGAGAGAACATCTGCACCCGTCCCCAAATCAATCGGGAGATTAACTCGTCTCAAGACATTAAGAGAGTTTAGAATCCAAAAACAT CAAGCTGCACAAGGAGGAGCCTCAATTGCTGATCTAAAGAACATGAACCAACTCCAGGGACTTCTTTGTGTGTGTGGTCTAAGTAATGTGGCAGAGAGTT ATGAGGTGGAACAAGCTGATTTCGCCCGAAAAACAGCGCTGACCGGTTTAGTTCTCGAATTTAAAGATTATAAAGGTAACATTGGCGATGATAAGGATGA AGAATTGTTGGAAGCGGTAAGACCATCCACCAACTTGGAAGAACTGATTATAACTCGTTATATGGGTGCTTCGGTATCTCCGAGATGGATGGTGTCGCTC TCTAACTTAACTCGCCTTTCACTCATGTATTGCTACAAGGTGAAGTATCTGCCTCCTTTAGGGCATTTGCGGTCTCTCGAAAAACTATCATTCTTGGGAA TGATCAAAGTAAAGAATATAGGTGTTGAGCTTCTTGGACATGATATTGGAGCATTTCCGAGGCTGACAGTGCTGACATTTGAAAGTATGTGGGAGTGGGA AGAGTGGGATGATACGATGTTATCGTCACCATCAGTGATGCCTCGGCTAAGTTACTTGAAATTGCGCTACTGCAAGAAGTTAAAGAAGTTGCCCGATGCA ATTCTCGAGAAACCGACACTAGAAAGGCTAGAAGTGAATGATTGCAGAAGTCTTGGAAAATACCTTGCGTTGGAATTGGGACTATAA
AA sequence Show only first row Show all	>Lus10003571 pacid=23165479 polypeptide=Lus10003571 locus=Lus10003571.g ID=Lus10003571.BGIv1.0 annot-version=v1.0 MATQIVSKLIGQLGSVLTEELTRRGKLVVGAEKDVKKLASTFSSIEALLLDAEERQLTDKAVEDWLTKLKNVCYEIDDALDKWRTEILKRQIEDDNNSDD CCWLEKKLLEISNILKRVCPFLPTYCFSPDEIGVRYDIASVIEELYEKVDQIDKDKNVFGFTAKPAVLYKSLPTSSIIKFSDVKGREEETELLKEKLLQI SSDVQSISIQGAGGLGKTTLAKLLYNDKVVGDHFDKRTWVCVSDTFDPTTVAKTIFASLFGCAPEINTLSFMLEKISERTKGMRFLLVLDDVWEDSRSKW EELRNALSCNSPGSKILVTTRKGEVSRALGCIEDDVLLIGKVSEDVCRAIFTQVAFNGWNANEKERVESLCIDAVAKCDGLPLAAKVLGGVMQSKKSKSE WVKVLNSEMWHLEEVRKEVFRPLALSYYDLTPQLRRCFQVCAVFPKDYEMEKDELIKLWISQGFVGASGTQEVEDTGEEYFQILAARSFFQDFRTNKEVY ETEKRYCKMHDFVSDFAQMLSKGECVSMTMENWRNVTAVSINDSVVRNLRIDWDSRWSNLTISSSHFFLMEDLRSFMANSFNGMELDVWGHLCGIRSLVL THSELKKIPSTINQLIHMRHLDLSNNRLLEELCEEICELYNLWTLTINWCYQLKKLPLGMGNKLVNLKHIENERTSAPVPKSIGRLTRLKTLREFRIQKH QAAQGGASIADLKNMNQLQGLLCVCGLSNVAESYEVEQADFARKTALTGLVLEFKDYKGNIGDDKDEELLEAVRPSTNLEELIITRYMGASVSPRWMVSL SNLTRLSLMYCYKVKYLPPLGHLRSLEKLSFLGMIKVKNIGVELLGHDIGAFPRLTVLTFESMWEWEEWDDTMLSSPSVMPRLSYLKLRYCKKLKKLPDA ILEKPTLERLEVNDCRSLGKYLALELGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	0	1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10036586 [exp]	1.4	0.9327
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10013968 [exp]	2.0	0.9324
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	3.9	0.8951
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10015393 [exp]	4.5	0.8788
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	6.0	0.9172
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10002037 [exp]	11.5	0.9098
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10008358 [exp]	14.9	0.8927
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011426 [exp]	15.2	0.8766
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10010647 [exp]	15.5	0.8870
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10033302 [exp]	18.3	0.8455

Compare expression of checked genes

Lus10003571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.