Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75490 137 / 4e-41 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT5G18450 132 / 7e-38 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT2G40350 120 / 5e-35 AP2_ERF DREB2H Integrase-type DNA-binding superfamily protein (.1) AT2G40340 122 / 5e-34 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding superfamily protein (.1) AT3G57600 112 / 1e-30 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT2G38340 105 / 2e-28 AP2_ERF DREB2E, DREB19 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) AT5G05410 105 / 9e-28 AP2_ERF DREB2A DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) AT3G11020 97 / 3e-24 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT4G06746 87 / 3e-22 AP2_ERF DEAR5, RAP2.9 DREB AND EAR MOTIF PROTEIN 5, related to AP2 9 (.1) AT1G46768 86 / 1e-21 AP2_ERF RAP2.1 related to AP2 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010632 [exp] 136 / 2e-40 AT1G75490 174 / 6e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10002855 [exp] 122 / 4e-34 AT2G40340 132 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10012226 [exp] 119 / 1e-32 AT2G40340 137 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10024298 [exp] 117 / 1e-32 AT1G75490 159 / 1e-48 Integrase-type DNA-binding superfamily protein (.1) Lus10006127 [exp] 117 / 1e-32 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 111 / 6e-30 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10034902 [exp] 106 / 2e-28 AT2G40340 172 / 7e-52 Integrase-type DNA-binding superfamily protein (.1) Lus10023633 [exp] 106 / 4e-28 AT2G40340 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 106 / 4e-28 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233300 [exp] 123 / 4e-35 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.002G029400 [exp] 123 / 4e-35 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 114 / 2e-31 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 114 / 3e-31 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.010G183700 [exp] 107 / 2e-28 AT5G05410 124 / 1e-33 DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) Potri.008G073600 [exp] 106 / 3e-28 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.006G104200 [exp] 100 / 6e-25 AT2G38340 91 / 1e-20 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.002G124000 [exp] 89 / 8e-23 AT1G46768 158 / 3e-50 related to AP2 1 (.1) Potri.006G138900 [exp] 88 / 2e-22 AT5G21960 86 / 3e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.009G101900 [exp] 89 / 8e-22 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10003581 pacid=23165470 polypeptide=Lus10003581 locus=Lus10003581.g ID=Lus10003581.BGIv1.0 annot-version=v1.0 ATGGAGCAGGACCAACAGGGCAGCAAGAGGCCGAAGAAGGCGTTAGTGGTGAGGTCGTCGAGAAAAGGATGCATGAGAGGGAAAGGAGGGCCAGAGAATG CAAACTGCAGCTACAGAGGAGTGAGGCAGAGGACATGGGGGAAATGGGTTGCAGAGATAAGGGAACCTAACAGAGGCAACAGACTTTGGTTGGGAACTTT CAACACGTCGCTGGAAGCAGCAAGAGCCTATGATCGAGCCGCGTTAAGTCTGTACGGCCCTTCAGTAACTCTCAACCTTCCGGAAGAAAACGTGGGGTCT TCTAGTGCTTCTTCATCTGTTGCTGCTGTCGATATTGCTGTTCATGATGATTCACAAGAGGTAGTAGTGAAGGGTGACGATGGAGGAGAAGGTTTGGTGG ATTGGATGGAGTTTGCTAATGAATTTGTGGAGTTGGATAGTGAGTGGAGGCAGCATGGTGTCGGAATGGGAAGCTGCTTGAATAGTTGGGATGGTGGTGG CTTTGTGGAAAACTGTCCTTGGAGCTTTTAG
AA sequence Show only first row Show all	>Lus10003581 pacid=23165470 polypeptide=Lus10003581 locus=Lus10003581.g ID=Lus10003581.BGIv1.0 annot-version=v1.0 MEQDQQGSKRPKKALVVRSSRKGCMRGKGGPENANCSYRGVRQRTWGKWVAEIREPNRGNRLWLGTFNTSLEAARAYDRAALSLYGPSVTLNLPEENVGS SSASSSVAAVDIAVHDDSQEVVVKGDDGGEGLVDWMEFANEFVELDSEWRQHGVGMGSCLNSWDGGGFVENCPWSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10003581 [exp]	0	1
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	4.4	0.9482
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	7.7	0.9372
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	8.5	0.9344
					Lus10014719 [exp]	11.7	0.9295
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10020741 [exp]	12.4	0.9182
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	13.6	0.9295
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	17.1	0.9237
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	18.3	0.9213
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	19.7	0.9109
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	20.2	0.9182

Compare expression of checked genes

Lus10003581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.