Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47520 139 / 1e-40 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT3G16770 136 / 7e-39 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT1G72360 135 / 2e-38 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT2G33710 109 / 1e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 105 / 3e-27 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G61890 103 / 3e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47230 100 / 1e-24 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G51190 97 / 3e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G78080 99 / 7e-24 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT4G17490 98 / 7e-24 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008214 [exp] 474 / 3e-171 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037448 [exp] 127 / 3e-34 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10016827 [exp] 124 / 6e-34 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10037487 [exp] 120 / 5e-33 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10013186 [exp] 124 / 6e-33 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3) Lus10014054 [exp] 108 / 3e-28 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10011830 [exp] 94 / 9e-24 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10032498 [exp] 96 / 1e-23 AT5G07580 144 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10024883 [exp] 95 / 1e-23 AT3G23230 130 / 3e-39 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G126100 [exp] 197 / 6e-62 AT3G16770 122 / 3e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.002G201600 [exp] 178 / 3e-54 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.010G006800 [exp] 134 / 3e-38 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.008G210900 [exp] 133 / 2e-37 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.003G071700 [exp] 131 / 1e-35 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.001G163700 [exp] 130 / 2e-35 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.001G067600 [exp] 109 / 1e-28 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 108 / 2e-28 AT5G13330 142 / 5e-42 related to AP2 6l (.1) Potri.009G101900 [exp] 107 / 9e-28 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.004G141200 [exp] 104 / 2e-26 AT4G34410 130 / 2e-36 redox responsive transcription factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10003601 pacid=23159184 polypeptide=Lus10003601 locus=Lus10003601.g ID=Lus10003601.BGIv1.0 annot-version=v1.0 ATGTGTGGCGGAGCCATTATCGCCGATTTCATTCCTCGCAACCGCAACCGCAACTTAACCGCTGCCGACCTATGGCCGGAGTCCTTTTTCAGCAAAGCCA GCCCCTCTGATACTCACGATCAGCCAGCCTCACTCCCTGCCAAAAGATCCCACCAAACCTCTTCAGGTTGTGCGCAATCAGATAATAACAAAGGCGAACC AGTCAAGAAGCAGAGGAAGAACCTGTACAGGGGAATCAGACAGCGGCCGTGGGGGAAATGGGCTGCCGAGATTCGCGACCCGAGGAAAGGCGTTCGTGTT TGGCTTGGCACCTTCAACTCCGCCGAGGAGGCGGCTCGCGCATATGACAAAGAGGCACTCAAAATCCGCGGCAAGAAAGCTAAAGTCAATTTCCCCAATG AAGAATCGATCAATTACTCAAACATTCACCCTCCGATTCAGATCTTGCAGTCCAATAACCAGCACGATCCGATCATTCTGGATAGCTACCCGGAGAGCTG TAATTTCGGGTTCGACCTCAACCAGATCGAGGACTACCCTTCTTCCACTGGTTGGAACAATAACAATGGCGGTTACGGTGCTGGTGAATTCCTTGGTGTC AAAGAAGAAGAAGAGGAGGAAGTAGTGCCGGAGAGTAAGATCCATAGCTCCGAAGAGTCGGAGCAGACATCGGAGGTGCAGATATTATCGGAGGAGCTGA TGGCGTATGAGAATTACATGAAGTTTTATCAGATTCCATATATGGAAGGGGAATCGGTGAGCCGTCAGAGCGCCGCCCAGGAGAGCGTCGTGGGAGATCT CTGGAACTTCGACGACGATGTCGATTCTCTTTAA
AA sequence Show only first row Show all	>Lus10003601 pacid=23159184 polypeptide=Lus10003601 locus=Lus10003601.g ID=Lus10003601.BGIv1.0 annot-version=v1.0 MCGGAIIADFIPRNRNRNLTAADLWPESFFSKASPSDTHDQPASLPAKRSHQTSSGCAQSDNNKGEPVKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRV WLGTFNSAEEAARAYDKEALKIRGKKAKVNFPNEESINYSNIHPPIQILQSNNQHDPIILDSYPESCNFGFDLNQIEDYPSSTGWNNNNGGYGAGEFLGV KEEEEEEVVPESKIHSSEESEQTSEVQILSEELMAYENYMKFYQIPYMEGESVSRQSAAQESVVGDLWNFDDDVDSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	0	1
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10008214 [exp]	1.0	0.9948
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	1.7	0.9906
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	2.0	0.9917
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	2.8	0.9897
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	3.9	0.9891
AT4G31290			ChaC-like family protein (.1)		Lus10020181 [exp]	5.7	0.9783
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	5.9	0.9848
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10033308 [exp]	6.0	0.9780
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	6.0	0.9850
AT2G41640			Glycosyltransferase family 61 ...		Lus10031057 [exp]	6.6	0.9774

Compare expression of checked genes

Lus10003601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.