Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21120 348 / 7e-114 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 265 / 6e-82 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 224 / 3e-66 CAT8 cationic amino acid transporter 8 (.1) AT5G04770 202 / 4e-58 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G10600 149 / 8e-39 CAT7 cationic amino acid transporter 7 (.1) AT5G36940 119 / 2e-28 CAT3 cationic amino acid transporter 3 (.1) AT1G58030 108 / 6e-25 CAT2 cationic amino acid transporter 2 (.1) AT3G03720 108 / 8e-25 CAT4 cationic amino acid transporter 4 (.1.2) AT1G05940 96 / 5e-21 CAT9 cationic amino acid transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001581 [exp] 424 / 2e-140 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10023271 [exp] 382 / 6e-127 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 245 / 6e-74 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 237 / 8e-71 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10040142 [exp] 164 / 6e-44 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10000962 [exp] 164 / 7e-44 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10028116 [exp] 135 / 3e-37 AT4G21120 199 / 2e-61 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042898 [exp] 115 / 4e-27 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10028195 [exp] 114 / 6e-27 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131300 [exp] 359 / 6e-118 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.015G133100 [exp] 357 / 4e-117 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 330 / 2e-106 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 330 / 2e-106 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 274 / 3e-85 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 243 / 2e-73 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1) Potri.010G241000 [exp] 170 / 3e-46 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.003G083700 [exp] 153 / 3e-40 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.001G150700 [exp] 150 / 4e-39 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.008G017100 [exp] 143 / 9e-37 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10003697 pacid=23179477 polypeptide=Lus10003697 locus=Lus10003697.g ID=Lus10003697.BGIv1.0 annot-version=v1.0 ATGGCCGTCGACGACGTAGGAGTAGAAACCAAATCAAACAGAGACGGAGGATGCTTCTGCAGGAAACAAGACTTCCTGCCAGAAGAGTCGTTCCAAAGCT GGTCAAACTACGCCCGGGCGCTCAAGGAAACCCCCGGCCGGTTCGTGAACCGGGTCATGGCCCGGTCTATGGACGACACGGAGCTCCACGAAGTCAAGGC CCGGAGCGAGCACGAGATGAAGAAGACCCTCAACTGGTGGGACCTCATGTGGTTCGGGATCGGCGCCGTCATCGGCGCCGGCATCTTCGTGCTCACTGGC CTCGAGGCGCGTGACCATGCCGGCCCCGCCGTCGTGCTGTCCTATGTGGTTTCGGGGGTTTCGGCTATGCTTTCCGTTTTCTGTTATACAGAGTTCGCCG TTGAGATTCCCGTTGCAGGTACGTGGCTCATTCGCATACTTAAGAGTAGAGCTCGGAGACTTCGTCGCCTTCATCGCCGCCGGAAACATCCTCCTCGAAT ACGTAATAGGCGGCGCCGCCGTCTCCCCCNNNNNNNNNNNNNNNNNNTCTCCAACTACAGCGCCTCCATATTCCACGTGGCGGTCCACCTCTTCATCATC GTGGCCGGGTTCGTCAAAGCCGACTCGAAAAACCTGACCCCGTTCAACCCGTACGGCGCCCGGGGCATTTTCGTCTCTTCCGCCGTTTTGTTCTTTGCTT ACGTGGGATTCGACGCCGTTTCGACCATGGCCGAGGAGACTAAGGATCCGGCTAGGGATATTCCGATCGGGCTTGAGATTGACCCTGACGCGCCTTTCTC GGTCGCGTTCTCATCCGTTGGATGGGATTGGGCTAAGTACATCGTGGCCGCTGGTGCGCTTAAGGGGATGACCACTGTTTTGCTTGTTTCGGCCGTGGGG CAGGCTTGGTATTTGACTCATATCGCTAGGACCCACATGATGCCACCGTGGCTTGCTCAAGTCAACTCCCGGACGGGAACCCCAGTTAACGCGACGGTGG TCATGCTGACAGCAACTGCGATCATCGCCTTCTTTACCAAATTTGACATTCTCTCGAACCTTTTGAGTGACCATCAGAGCCGACCAGCGGAATCTGATCG GATGCATCACGATCATTCTAGGGTCCGCGATCGCCACTACATTCTTGTGGGGGCTAGGAGGAGACGGGTGGGTGGGTTACGTCATGACCGTTCCCATATG GTTTCTGGCCACCCTGGCGCTAGGCTATGGGCTACGGTGCCTCAGGCTAGGGAGCCGAAGCTGTGGGGGGTCCCGCTCGTGCCATGGTTGCCGTCGGCTT CCATAATGATAAACATGTTCCTTTTGGAATCCATCGATAAGGCGTCGTTCGCTAGGTTCGGAGCTTGGACCGGTCTTTTGTTGGTTTATTACTTCTTGTT CGGGATGCATGCGACTTGCGACATTGCTAAGGAGACCGAGATCGAGAAGAAGAAGAAGTTGGTCGAGGGTAGAAAGATTGAAGGAGGAGATCAAGGGGTT TAA
AA sequence Show only first row Show all	>Lus10003697 pacid=23179477 polypeptide=Lus10003697 locus=Lus10003697.g ID=Lus10003697.BGIv1.0 annot-version=v1.0 MAVDDVGVETKSNRDGGCFCRKQDFLPEESFQSWSNYARALKETPGRFVNRVMARSMDDTELHEVKARSEHEMKKTLNWWDLMWFGIGAVIGAGIFVLTG LEARDHAGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPVAGTWLIRILKSRARRLRRLHRRRKHPPRIRNRRRRRLPXXXXXXXSNYSASIFHVAVHLFII VAGFVKADSKNLTPFNPYGARGIFVSSAVLFFAYVGFDAVSTMAEETKDPARDIPIGLEIDPDAPFSVAFSSVGWDWAKYIVAAGALKGMTTVLLVSAVG QAWYLTHIARTHMMPPWLAQVNSRTGTPVNATVVMLTATAIIAFFTKFDILSNLLSDHQSRPAESDRMHHDHSRVRDRHYILVGARRRRVGGLRHDRSHM VSGHPGARLWATVPQAREPKLWGVPLVPWLPSASIMINMFLLESIDKASFARFGAWTGLLLVYYFLFGMHATCDIAKETEIEKKKKLVEGRKIEGGDQGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10003697 [exp]	0	1
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	1.0	0.9824
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	4.7	0.9684
					Lus10036765 [exp]	5.7	0.9684
AT2G16190			unknown protein		Lus10011284 [exp]	6.6	0.9684
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	7.4	0.9684
					Lus10006395 [exp]	8.1	0.9684
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	8.5	0.9573
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10026188 [exp]	8.8	0.9642
					Lus10008289 [exp]	11.8	0.9473
					Lus10017955 [exp]	12.3	0.9637

Compare expression of checked genes

Lus10003697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.