Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02840 172 / 7e-56 Small nuclear ribonucleoprotein family protein (.1.2) AT3G07590 171 / 3e-55 Small nuclear ribonucleoprotein family protein (.1.2) AT1G20580 50 / 5e-08 Small nuclear ribonucleoprotein family protein (.1) AT1G76300 47 / 6e-07 SMD3 snRNP core protein SMD3 (.1) AT5G27720 43 / 2e-05 LSM4, EMB1644 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) AT1G03330 39 / 0.0004 Small nuclear ribonucleoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028022 [exp] 180 / 7e-59 AT3G07590 181 / 1e-60 Small nuclear ribonucleoprotein family protein (.1.2) Lus10025186 [exp] 166 / 3e-53 AT3G07590 169 / 6e-56 Small nuclear ribonucleoprotein family protein (.1.2) Lus10016068 [exp] 166 / 3e-53 AT3G07590 169 / 6e-56 Small nuclear ribonucleoprotein family protein (.1.2) Lus10040596 [exp] 93 / 2e-23 ND / Lus10032702 [exp] 91 / 7e-22 AT5G56730 135 / 7e-36 Insulinase (Peptidase family M16) protein (.1) Lus10021579 [exp] 87 / 1e-21 ND / Lus10025371 [exp] 85 / 1e-19 ND / Lus10023759 [exp] 80 / 7e-19 ND / Lus10033166 [exp] 82 / 2e-18 AT5G39600 207 / 1e-67 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054800 [exp] 175 / 6e-57 AT3G07590 183 / 1e-61 Small nuclear ribonucleoprotein family protein (.1.2) Potri.005G207900 [exp] 164 / 2e-52 AT4G02840 152 / 3e-49 Small nuclear ribonucleoprotein family protein (.1.2) Potri.002G010200 [exp] 50 / 4e-08 AT1G20580 214 / 5e-73 Small nuclear ribonucleoprotein family protein (.1) Potri.005G251100 [exp] 49 / 1e-07 AT1G20580 211 / 6e-72 Small nuclear ribonucleoprotein family protein (.1) Potri.002G205700 [exp] 43 / 2e-05 AT5G27720 179 / 5e-59 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Potri.014G130700 [exp] 42 / 6e-05 AT5G27720 176 / 7e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Potri.004G219000 [exp] 37 / 0.001 AT1G03330 184 / 1e-62 Small nuclear ribonucleoprotein family protein (.1) Potri.003G014900 [exp] 37 / 0.001 AT1G03330 184 / 1e-62 Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Lus10003727 pacid=23169640 polypeptide=Lus10003727 locus=Lus10003727.g ID=Lus10003727.BGIv1.0 annot-version=v1.0 ATGAAGCTCGTCAGGTTTTTGATGAAGTTGAACAACGAGACCGTTTCAATTGAGCTCAAGAATGGGACCGTTGTTCATGGCACCATTATAGGTGTGGACA TAAGCATGAACACTCATCTGAAAACGGTGAAATTAACACTGAAAGGGAAGAATCCAGTAACTCTAGACCATCTCAGTGTTAGAGGCAACAACATCCGGTA TTACATCCTTCCTGACAGCTTGAATCTCGAGACATTGCTGGTCGAAGAGACGCCCAAGATCAAACCAAAGAAGGCAGTTGCGGGAAGGGCTGTGGGTCGT GGACGAGGTCGCGGCCGTGGACGGGGACGTGGTCGAGGACTCGAAATACTCTCTGAAATCAATCCCCGGAACTGCCCACCTATCGCTGCCGAAGACCCAT GCCTGCCGCCGCCGCCGCCTACCCCGGCCGGCACCCCACTCGTCGTCGCCCATACAGAAGCTATGTCGATTGGAGATGATGACTTGCCACGGTTTATCGG TCGTCCTATTTCTGCATCAAATAGGAAATTGTTGGAGGAGAAATGGAAGGGAAAGAAATCTAGACTAGGGGATGATGGGCAGTCTAGTGCGCAGTTTTAG
AA sequence Show only first row Show all	>Lus10003727 pacid=23169640 polypeptide=Lus10003727 locus=Lus10003727.g ID=Lus10003727.BGIv1.0 annot-version=v1.0 MKLVRFLMKLNNETVSIELKNGTVVHGTIIGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPKIKPKKAVAGRAVGR GRGRGRGRGRGRGLEILSEINPRNCPPIAAEDPCLPPPPPTPAGTPLVVAHTEAMSIGDDDLPRFIGRPISASNRKLLEEKWKGKKSRLGDDGQSSAQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	0	1
AT1G11240			unknown protein		Lus10011247 [exp]	1.0	0.9485
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	2.0	0.9323
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10023091 [exp]	3.0	0.9078
AT1G76860			Small nuclear ribonucleoprotei...		Lus10040487 [exp]	3.2	0.9067
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	3.5	0.9034
AT5G14530			Transducin/WD40 repeat-like su...		Lus10014558 [exp]	4.5	0.9126
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	5.5	0.8719
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	5.7	0.9200
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	6.0	0.9118
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	7.2	0.9135

Compare expression of checked genes

Lus10003727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.