Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 507 / 3e-158 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 485 / 3e-149 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 468 / 1e-143 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 413 / 1e-123 TAO1 target of AVRB operation1 (.1) AT1G27170 406 / 6e-120 transmembrane receptors;ATP binding (.1.2) AT1G27180 399 / 1e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G63880 379 / 1e-112 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 382 / 2e-112 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 379 / 2e-111 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G41750 376 / 3e-111 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011104 [exp] 797 / 0 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10028043 [exp] 630 / 0 AT5G17680 59 / 4e-09 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 521 / 3e-162 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 510 / 6e-159 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 499 / 8e-155 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10028042 [exp] 438 / 3e-143 AT5G17680 145 / 2e-38 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 452 / 9e-139 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 447 / 3e-133 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 422 / 3e-127 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069200 [exp] 747 / 0 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 716 / 0 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 712 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098000 [exp] 699 / 0 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097000 [exp] 696 / 0 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097300 [exp] 695 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104901 [exp] 682 / 0 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 676 / 0 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 672 / 0 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G002500 [exp] 588 / 0 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10003749 pacid=23169645 polypeptide=Lus10003749 locus=Lus10003749.g ID=Lus10003749.BGIv1.0 annot-version=v1.0 ATGACTTCATCAACTCTCCCTTCATCTTCAACAAACCCACAACAACCGTGGACCTACGACGTTTTCCTCAGCTTTCGAGGCCGAGACACCCGCAACACCT TCACATCCCATCTCTACAGTGCCTTGAACCGGAGAGGGATCAAGGTGTACAGAGATGACAAGGAGTTGGCGAGAGGGGATTCGATCGAGCCCTCTCTTCT CAGCGCCATCGAAGCTTCGAGGTTCTCGATTGTTGTGCTCTCAAAAAACTATGCGTCCTCTGCTTGGTGCTTGGAGGAACTGTCCAAGATTGTGGAATGT AGGAAGGCATGTCGTCACACTGTGTTCCCTGTCTTTTTCGATGTGGATCCGGGCGATGGTGCCTACCGGAAGAGTGCGATTTGTCAACACGAGAAGGATG GCTGCTCGGCGGAGCAGGTGAGGAGATGGGAGGAAGCTCTTAAAGAAGTCATGGAAAATATTTCTGGCGAGGTTGTCATGAACAAGGATGAATCAGAAAT AGTAAGTGGAATAGTTGAAAACTTATGGAACCACCTGACCCACTCATCATCCTCAAGCATCATCAAGGACAGTACTCACTTGGTCGGAATGGACTCAAGA ATCAACCAAGTGATGAAACTCTTAGCCGCCGACAAAGATTCAGACGACACCAACGTTCGACTCATTGGAATCTCCGGCATGGGCGGAATCGGGAAAACAA CCTTAGCCAGAGTCCTTCACCACACATTACTTGCACAACACTCCTCCAAGTTCCACGGCCAATCCTGCTTTCTCTACAACGTCAGGGAACGTTTCGAAAA ACACGGACCGACCCACCTCCAAGAACACCTCCTCTCAGACATCCTGATGGACAAAAACACCATACCGATTCGAGACCCCGAGAAAGGAAGAATCTTGATC AAGCAATGCTTGCAGAACAAGAAAGTCCTCATCTTTCTCGACGACGTGGATGACCCCCTACAGCTGGAGATGCTGGCCGTGAATCGAGACTCGTTCGGTC CGGGGAGTCGGATCGTTGTAACGAGTCGAGATAAAGAGCTGGTGACGAAATATGCTAGTAGCAGCTCAAGTTATTGGGAAGCAGGGGAATGTGGAGTGTA TAGTATTGAGAAGTTGGGCGAGGATGAAAGCCTTAGACTTTTCAGTTGGAAGGCTTTTAAAAGTAACGATCCAGCCAAAGGGTTTGAGGAGATGTGTAAA TGTGTATTGGAGTACTGCCAAGGGCTTCCATTGGCTATCGAAGTGTTGGGTTGTTTGCTTAATGGGAAGAGCAAAGGTCAGTGGGAAAGTCAGATTGATT TGTTGAAGGGTGAGGATTATAATTACTCTATTGATGGGATTATGAATGTTCTGAAGATAAGTTATGATGGGTTGAGGGACGATCAAAAGAAGATATTTCT GGACATTGCATGTTTCTTCAAGGGGAAAGATGTGAGTGATGGAAGTAGGATTCTGAGTTCATTTAGGTTGTCTGTTGAGAGTGGATTCGAAGCTCTTGTT GCCAAGTCCCTTCTGACAACTTGTTATGGGAAATTGGAGATGCATGACTTGTTGCAAGAAATGGGTAGAGAAATTGTTCGTCGAGAATCGCCTAATGATC AAGGGAAGCGTAGTCGTATGTGGCGTCCTGACGAGGTGTTCGATGTCTTGGAGACAGCTACAGTAACAGAAGAGGTGGAAGCAATAGTGTTGGATTTGCC AAGCAAAGATGCTAAGATACTTCGGAGCTGCAATGTGAAGGCTTTCGAAAAGATGTACAGACTGAGGTTGCTCATTGTACGAAACGTGGAGTTTGATCAA GGTCCTGAATATCTTCCAAGTGGTTTGAGTTTTCTTGAATGGGATGGATACCCTTCAGATTCATTGCCAAGTTCTTTCACACCAAGTAAACTTGTGGAAC TCAACATGTGCAACAGTAACATAGAGCAACTCTGTCGTGGAAGAAACACCAAGAATTTCACCAAATTGAAAGTCATGAACCTGAGCCACTCTCACAAGCT GACTGAGACACCAGATTTCATCGCTATCCCGAATGTGGAGAGGCTAGCATTTGAGGACTGTACTAGTCTGACCGAGATTCATCCATCGATAGTCCATCTC GAAAAGCTCGTCCATCTCAACTTCAGTGGCTGCACCAACATCAAGAACTTCCCACATACTATTGGAAGAAAAAAAATGACATCATTACAAGAACTTCTAC TCGACAAGACCAACATCCAGGAACTCCCCGAATCGATCAAATTGTTCACCGGGCTATCAAAACTGAGCCTCAAAGACTGCAAGAGCCTCATGATTGTACC AAAGGGGATTAGTAAGTTAAAAAGCTTGAAAGTTTTCAACCTGTCAGGATGCTCTCAGCTCGACAATGTCCCCGAAATAATGGGAGAATTGGAGAGCTTG GAGGAGCTTGATGTGAGTGGAACCGCCATCAGAAACCCTCCCTTCTCAATTTTCAGCCTCGGGAAACTGAAAATTCTATCCTTTCAAGGCTGCAACAATG GCTTGTCAAATCTGAAGCTGCCGGCTGTGTTTGGTTTCCCATTCATAAGGATTATGAACTTGGCAAACTGTGGGTTAGGAGAACGTGATATTCCAAGTGA GCTTGGAAAGTTGCCATCTTTATATTCTCTTGATCTTAGTGGCAATAGGTTTGTTAGCCTACCAGATATTACGGAGCTTTCTAGGCTGCATGAGCTGCAC TTGGAGGACTGTAAGATGCTTAAGTTTTTGCCAGAACTTCCATCAGAGATCAACTATGTGGTTGTGAATCGTTGCAGCTCGTTGGAAAAGCTTCCAAACC CGGTTAAGTTATGCAGCAACTTGTTTTTCTTGGAAGGGTTTGATTGTCCCAAGTTGCAGAATGGTAAAAAAGATGCTGGCTTTTCCATGTTCCTAAGATA TCTTCGGGGATGGTGGGATACTCCTCTCCCAAGGGAAAGATCGGGAATTGTAGTTCCCGGAAGAACGATTCCAATGTGGTTCAATTGTCCTAGTGAAGGG ACTTCAGTGAAGATACGAATCCCATCACGTTATCGCAAGACGAATTTCGATGATCCTGATAGCCATCATGACATAATGGGGCTTGCATTTTGCATAGCTC TCAAAGTGATGACTGATCCTCGTGATAATCAAGGTACTGATCATGCAGTGCATCGGCAGGATTCACCAGGCGACGAAGAACCACATGATGAAGAAATGGA AGGTTATTCATCAGAAGAATCAGTTGACATGGATGATGATACTGATGAAGAAGTGTACAATCAAGATTCATCATCAGCAACACTAGAAAATGATGACTAT TCCTATGATTCATACGATGAGGATGACGACGATGAAGAAATGGAAAACTACTCATCAGATTACGACAATAACGATTGTCCTGACGGAGATGGTCAGGATA ATAGCTTTTCAAGAAAGAGGGACTACTCAAAGTACTCAACATATGTAGAAGTAGTGGCAGATACAGGGAATCCCTCAATCGGGCCGAGGCCTAACTCATT TTCAGAGGAAGAATGTGGTGGTGGTGAAGAAGGAGAGCATCTATGGTACTTCTTCGTACCATACTACAACTTTACAGAGTATATGAAAGGGCAAAGCCAT CTTTACGTTGAGCTTGAAGGGTGTCCGGAGCTGAAGGTGATCAAGACCGGATGTCGTCTGGTTCTAAATGGAGAAATTGAAGACGAGGCAGAGAGTAGTA GCGATGACGATGGGGGAGGCGAATATTGTTGTGGTGATGGAGATGATGAGAAAGATTGTTACAAAAGGACTTCTCCTTACAACATATGCTACTATGAAGA CAAGATGATGCTAATAGGAATGTATTTCTTCTACTCCACCAACTCATCATCATTATCGAGTATTTCGAGTCGAAACGATCGTACTTCTTTGGGGATTTAT ATATACCGCCCATAA
AA sequence Show only first row Show all	>Lus10003749 pacid=23169645 polypeptide=Lus10003749 locus=Lus10003749.g ID=Lus10003749.BGIv1.0 annot-version=v1.0 MTSSTLPSSSTNPQQPWTYDVFLSFRGRDTRNTFTSHLYSALNRRGIKVYRDDKELARGDSIEPSLLSAIEASRFSIVVLSKNYASSAWCLEELSKIVEC RKACRHTVFPVFFDVDPGDGAYRKSAICQHEKDGCSAEQVRRWEEALKEVMENISGEVVMNKDESEIVSGIVENLWNHLTHSSSSSIIKDSTHLVGMDSR INQVMKLLAADKDSDDTNVRLIGISGMGGIGKTTLARVLHHTLLAQHSSKFHGQSCFLYNVRERFEKHGPTHLQEHLLSDILMDKNTIPIRDPEKGRILI KQCLQNKKVLIFLDDVDDPLQLEMLAVNRDSFGPGSRIVVTSRDKELVTKYASSSSSYWEAGECGVYSIEKLGEDESLRLFSWKAFKSNDPAKGFEEMCK CVLEYCQGLPLAIEVLGCLLNGKSKGQWESQIDLLKGEDYNYSIDGIMNVLKISYDGLRDDQKKIFLDIACFFKGKDVSDGSRILSSFRLSVESGFEALV AKSLLTTCYGKLEMHDLLQEMGREIVRRESPNDQGKRSRMWRPDEVFDVLETATVTEEVEAIVLDLPSKDAKILRSCNVKAFEKMYRLRLLIVRNVEFDQ GPEYLPSGLSFLEWDGYPSDSLPSSFTPSKLVELNMCNSNIEQLCRGRNTKNFTKLKVMNLSHSHKLTETPDFIAIPNVERLAFEDCTSLTEIHPSIVHL EKLVHLNFSGCTNIKNFPHTIGRKKMTSLQELLLDKTNIQELPESIKLFTGLSKLSLKDCKSLMIVPKGISKLKSLKVFNLSGCSQLDNVPEIMGELESL EELDVSGTAIRNPPFSIFSLGKLKILSFQGCNNGLSNLKLPAVFGFPFIRIMNLANCGLGERDIPSELGKLPSLYSLDLSGNRFVSLPDITELSRLHELH LEDCKMLKFLPELPSEINYVVVNRCSSLEKLPNPVKLCSNLFFLEGFDCPKLQNGKKDAGFSMFLRYLRGWWDTPLPRERSGIVVPGRTIPMWFNCPSEG TSVKIRIPSRYRKTNFDDPDSHHDIMGLAFCIALKVMTDPRDNQGTDHAVHRQDSPGDEEPHDEEMEGYSSEESVDMDDDTDEEVYNQDSSSATLENDDY SYDSYDEDDDDEEMENYSSDYDNNDCPDGDGQDNSFSRKRDYSKYSTYVEVVADTGNPSIGPRPNSFSEEECGGGEEGEHLWYFFVPYYNFTEYMKGQSH LYVELEGCPELKVIKTGCRLVLNGEIEDEAESSSDDDGGGEYCCGDGDDEKDCYKRTSPYNICYYEDKMMLIGMYFFYSTNSSSLSSISSRNDRTSLGIY IYRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	0	1
AT5G40240			nodulin MtN21 /EamA-like trans...		Lus10039481 [exp]	2.8	0.9206
					Lus10020249 [exp]	3.2	0.9064
AT1G09480			NAD(P)-binding Rossmann-fold s...		Lus10016389 [exp]	3.2	0.8908
AT2G37240			Thioredoxin superfamily protei...		Lus10013051 [exp]	4.9	0.9148
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	7.9	0.9158
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026235 [exp]	9.2	0.9035
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	11.7	0.9081
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	12.0	0.8901
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10038028 [exp]	16.5	0.8867
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032026 [exp]	17.1	0.9058

Compare expression of checked genes

Lus10003749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.