Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48150 439 / 2e-154 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 416 / 1e-143 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 406 / 2e-142 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 344 / 2e-116 GRAS SCL13 SCARECROW-like 13 (.1) AT1G21450 296 / 4e-97 GRAS SCL1 SCARECROW-like 1 (.1) AT5G52510 201 / 3e-60 GRAS SCL8 SCARECROW-like 8 (.1) AT1G66350 190 / 7e-57 GRAS RGL1 RGA-like 1 (.1) AT1G14920 185 / 5e-55 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT3G03450 184 / 3e-54 GRAS RGL2 RGA-like 2 (.1) AT1G07530 185 / 2e-53 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016596 [exp] 540 / 0 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 435 / 3e-152 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 414 / 4e-144 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 377 / 3e-129 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 374 / 5e-128 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10035840 [exp] 372 / 1e-126 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 365 / 9e-125 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 312 / 2e-103 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 308 / 5e-102 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361700 [exp] 471 / 2e-166 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.014G164400 [exp] 462 / 1e-162 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.016G009700 [exp] 385 / 1e-132 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.001G409500 [exp] 380 / 8e-130 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 377 / 7e-129 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.006G016200 [exp] 371 / 1e-126 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.005G186500 [exp] 315 / 1e-104 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 308 / 1e-101 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.017G142400 [exp] 227 / 1e-69 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1) Potri.004G078800 [exp] 215 / 3e-65 AT5G52510 482 / 1e-162 SCARECROW-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10003772 pacid=23180853 polypeptide=Lus10003772 locus=Lus10003772.g ID=Lus10003772.BGIv1.0 annot-version=v1.0 ATGAAGGATGAGAACCGGATCCACATCATTGATTTCCAAATTGCACAAGGTACTCAGTGGATCACTTTAATCCAGGCTCTAGCTGCTCGGCCTGGAGGAC CTCCACATATTCGAATTACGGGAATTGATGATTCGACATCAGCTTATGCTCGTGGAGGGGGGCTTGACATAGTTGGTAAAAGGCTAACAATGCTTGCACA ACAATGTAAAGTTCCATTCGAGTTCCGTTCTGTTGGTGTACCAGCTTCTGAAATTCAAGTGGAGAATCTGAAGATCCAACCTGGGGAGGCGATTGCTGTT AACTTTGCGTTGGTGCTGCACCACATGCCAGATGAAAGCGTGGGGACTCAAAATCACCGCGACAGATTGCTAAGGCTAGTTAAGGGCTTATCTCCCAAGG TAGCAGCTCTTGTTGAGCAGGAATCGAACACAAACACAGCTCCATTCTTAGCTCGATTCGTGGACACACTAACCTACTACTCAGCCATATTCGAGTCGAT TGATGTGGCTTTGCCAAGGGAGCATAAGGAGAGGATCAACGTAGAGCAGCATTGCCTGGCGAGGGAGGTGGTGAACATCATAGCTTGTGAGGGTGCTGAA AGAGTGGAACGTCACGAGCTTCTTGGGAAATGGAGATCGCGATTTGCAATGGCAGGGTTTAAGCCATACCCGCTGAGTAGTTATGTGAATGCGACCATCA GGACGCTGCTAGGAAACTACTCGAGTAAGTATACACTTGAGGAGAAGGACGGAGCTCTATATCTGGGATGGATGGACCGTCACCTGGTGTCTTCTTGTGC ATGGAAGTGA
AA sequence Show only first row Show all	>Lus10003772 pacid=23180853 polypeptide=Lus10003772 locus=Lus10003772.g ID=Lus10003772.BGIv1.0 annot-version=v1.0 MKDENRIHIIDFQIAQGTQWITLIQALAARPGGPPHIRITGIDDSTSAYARGGGLDIVGKRLTMLAQQCKVPFEFRSVGVPASEIQVENLKIQPGEAIAV NFALVLHHMPDESVGTQNHRDRLLRLVKGLSPKVAALVEQESNTNTAPFLARFVDTLTYYSAIFESIDVALPREHKERINVEQHCLAREVVNIIACEGAE RVERHELLGKWRSRFAMAGFKPYPLSSYVNATIRTLLGNYSSKYTLEEKDGALYLGWMDRHLVSSCAWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	0	1
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10011924 [exp]	2.8	0.8968
AT4G25030			unknown protein		Lus10033276 [exp]	4.2	0.8487
AT5G55560			Protein kinase superfamily pro...		Lus10001739 [exp]	4.2	0.8712
					Lus10007301 [exp]	6.3	0.8581
AT4G14440		HCD1, ATECI3	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10041154 [exp]	8.4	0.8889
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10030532 [exp]	8.9	0.8207
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10031347 [exp]	10.4	0.8107
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10004653 [exp]	11.5	0.8561
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10016596 [exp]	11.8	0.8759
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	12.6	0.8404

Compare expression of checked genes

Lus10003772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.