Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41190 612 / 0 Transmembrane amino acid transporter family protein (.1) AT2G39130 402 / 1e-133 Transmembrane amino acid transporter family protein (.1) AT5G02180 382 / 7e-126 Transmembrane amino acid transporter family protein (.1) AT3G54830 369 / 3e-121 Transmembrane amino acid transporter family protein (.1) AT5G02170 358 / 3e-117 Transmembrane amino acid transporter family protein (.1.2) AT3G09340 348 / 4e-113 Transmembrane amino acid transporter family protein (.1) AT3G09330 347 / 1e-112 Transmembrane amino acid transporter family protein (.1) AT3G28960 298 / 3e-95 Transmembrane amino acid transporter family protein (.1) AT5G15240 288 / 3e-91 Transmembrane amino acid transporter family protein (.1.2) AT5G16740 212 / 2e-62 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010457 [exp] 888 / 0 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10039190 [exp] 368 / 3e-120 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010855 [exp] 354 / 1e-113 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10012824 [exp] 308 / 5e-99 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 297 / 1e-94 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 295 / 1e-93 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10030683 [exp] 289 / 1e-91 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10024374 [exp] 280 / 8e-87 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1) Lus10038702 [exp] 265 / 4e-82 AT2G39130 556 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G038700 [exp] 531 / 0 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 402 / 1e-133 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 394 / 2e-130 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 393 / 2e-130 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 304 / 2e-97 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.010G169000 [exp] 302 / 6e-97 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 301 / 2e-96 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 295 / 6e-94 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.018G099700 [exp] 238 / 3e-72 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 209 / 1e-60 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10003817 pacid=23145949 polypeptide=Lus10003817 locus=Lus10003817.g ID=Lus10003817.BGIv1.0 annot-version=v1.0 ATGGTGACGCATACTCGGGTTAAGGAAGCAGATCGCCCGTCTTCGTCGGCGGATTTCTTCCTTGACGAGGACGACGACGGAGACTTGACCGGGGCCAAAG CCGACGACGATGACACTGCGAGTCGTAGCTCCAGTAGCAGCTCTGCGTCCGACGGTGAAGGTGACGACGACAACGACAACGACGATGATAATAAGAATGG CAATGGTGACGTTGCTGGAACCTTCACGTCTCAGCAATGGCCGCAGAGTTATCGAGAGACAATGGATTCATACTCTATCGCAATGTCGCCGAGTCTTGCC TTTATGGCGCCAGTGCAACAACTGCCACGATACTTGGGTCTTGATAGCTTCAGTAGAAGTAATGCAGACTTGGATTGCAAAGCTCCTTTCCTTCCAGAGC ATCAAAGGAGCTACAGGAGGGTTGAATCCGACAGGTTCTCGCTAGCACGGTCGTCTTTCTCGAAAGCTTCATTCGCAACTACGGAGTTGCCACTTCCTCA TGGCTGTAGCGTTACTCAAACTGTCTTCAATGCGGTAAATGTAATGGTTGGGATCGGGCTTCTTTCAACGCCTTTCACTATCCGAGAAGGAGGGTGGATG AGTCTGTTCGTAGTGGCATTTTTCGCATGCGTGTGCTGCTACACTGCTTATCTTATGAAGCAATGCTTTGAGAGCAGAGATGGTATAACATCATATCCGG ACATGGGAGAAGCTGCATTTGGGAAATACGGGCGCCTAGCAATATCGATCATTTTGTACACAGAGTTATATTCTTATTGTGTGGAATTTATTACATTGGA AGGGGATAACCTTACTAGGCTATTTCCTGGGACATCCCTCGACCTTGTTGGCATACATCTCGACTCCTCGCATATATTTGGGATAGTGACTGCTTGTGTT GTGCTACCGACTCTCTGGTTAAAGGACCTCCGTATTATCTCCTTCCTTTCAGCTGGTGGAGTTGTAGCTACAATTTTGATTGTTCTCTCCCTATTTTTCC TTGGCACATCGGAAGGAATCGGGTTCCACCAAACCGGTCCACTCGTGAAATGGAACGGCATTCCATTTGTCATTGGTGTGTATGGGTTCTGTTACTCAGG GCACTCAGTTTTTCCAAACATCTACCAGTCAATGGCAAACAAAGCAGACTTCACGAAGGCAGCAATAGCATGCTTTCTGATCTGCTTCCTTCTGTATGGA GGTGTTGCAATTATGGGATTTCTCATGTTTGGCGAGGCTACACTCTCTCAAGTGACGTTGAACATGCCACAGGACACCATTACTTCAAAAGTCGCTATAT GGACTGTGGTTATAAACCCGCTGACAAAATATCCTTTCGCCATTGTTTTTACATTGAAACTTTACTTTTATCTACGTGATTCCTTAACAAAGAGCACATA TGCATTGTTGATGAACCCATTGGCCAGAAGCATAGAGGAGCTATTGCCAGTTAGAATCGCCACCAGCCCTTGGTGTTTCTACCTTCTGAGAGCCGTACTT GTCTTCTCTTCCCTCTGTGCTGCCTTTCTTCTTCCGTTCTTTGGTCTCGTGATGGCTTTGATGGGATCAATCCTCTGTTTACTAATGGCTGTCATAATGC CATCGCTGTGCTTCTTGAGAATCATGGGGAAGAAAGCTTCACGAATGCAGGCATCGTCTGCTCGATTGTGGGGACCTACTCGTCAGTCGCAAAGATTATG CAGAACTACTGACCATATGCATTCTTCGTTGGATTCGCTCGCCTCTGTCTCTGAACGTGATAGTAAATATCAAGATTCTGCTCATGGAGGTCTTTTGAAC AGTGTAAGAGTAGTGTAG
AA sequence Show only first row Show all	>Lus10003817 pacid=23145949 polypeptide=Lus10003817 locus=Lus10003817.g ID=Lus10003817.BGIv1.0 annot-version=v1.0 MVTHTRVKEADRPSSSADFFLDEDDDGDLTGAKADDDDTASRSSSSSSASDGEGDDDNDNDDDNKNGNGDVAGTFTSQQWPQSYRETMDSYSIAMSPSLA FMAPVQQLPRYLGLDSFSRSNADLDCKAPFLPEHQRSYRRVESDRFSLARSSFSKASFATTELPLPHGCSVTQTVFNAVNVMVGIGLLSTPFTIREGGWM SLFVVAFFACVCCYTAYLMKQCFESRDGITSYPDMGEAAFGKYGRLAISIILYTELYSYCVEFITLEGDNLTRLFPGTSLDLVGIHLDSSHIFGIVTACV VLPTLWLKDLRIISFLSAGGVVATILIVLSLFFLGTSEGIGFHQTGPLVKWNGIPFVIGVYGFCYSGHSVFPNIYQSMANKADFTKAAIACFLICFLLYG GVAIMGFLMFGEATLSQVTLNMPQDTITSKVAIWTVVINPLTKYPFAIVFTLKLYFYLRDSLTKSTYALLMNPLARSIEELLPVRIATSPWCFYLLRAVL VFSSLCAAFLLPFFGLVMALMGSILCLLMAVIMPSLCFLRIMGKKASRMQASSARLWGPTRQSQRLCRTTDHMHSSLDSLASVSERDSKYQDSAHGGLLN SVRVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41190			Transmembrane amino acid trans...		Lus10003817 [exp]	0	1
AT1G31690			Copper amine oxidase family pr...		Lus10041208 [exp]	47.1	0.6808
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	174.2	0.6551
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025867 [exp]	176.8	0.6399
AT2G33670		ATMLO5, MLO5	MILDEW RESISTANCE LOCUS O 5, S...		Lus10013211 [exp]	198.2	0.6447
AT3G12050			Aha1 domain-containing protein...		Lus10029141 [exp]	210.6	0.6471

Compare expression of checked genes

Lus10003817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.