Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64380 175 / 3e-52 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G78080 123 / 2e-32 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT1G22190 120 / 4e-32 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT4G39780 119 / 2e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 110 / 7e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G22200 108 / 2e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G13620 104 / 4e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 100 / 5e-24 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT5G65130 99 / 7e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G28140 86 / 4e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001898 [exp] 442 / 2e-157 AT1G64380 210 / 1e-65 Integrase-type DNA-binding superfamily protein (.1) Lus10020913 [exp] 121 / 1e-31 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10033463 [exp] 119 / 5e-31 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10016801 [exp] 118 / 2e-30 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10022497 [exp] 113 / 8e-29 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10019665 [exp] 110 / 1e-28 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10000582 [exp] 107 / 1e-27 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10039809 [exp] 100 / 6e-24 AT2G20880 186 / 1e-55 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10016669 [exp] 99 / 7e-24 AT4G13620 184 / 2e-55 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092400 [exp] 219 / 1e-69 AT1G64380 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Potri.003G139300 [exp] 213 / 3e-67 AT1G64380 173 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Potri.002G094200 [exp] 123 / 2e-32 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 123 / 2e-32 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G077300 [exp] 122 / 6e-32 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 121 / 2e-31 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.017G055400 [exp] 108 / 3e-26 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 103 / 8e-25 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 103 / 1e-24 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 100 / 2e-23 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10003889 pacid=23144340 polypeptide=Lus10003889 locus=Lus10003889.g ID=Lus10003889.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTTTGTGGCAGTAACAACAACAATCCCTCCGATATGGACATCGGTACCTCCCTTTCTCAGCTCATACTGATGGGAGGAGCAGGATCCAACA CTCTCGATTCCATCTTCTCCTTCTGCCACCACTACCCCCAATTTTCTTCCTCTTCCTCTGCCATGGAGCCGTTAGGTTCCTCTGTCTACCTCCGCCAGAG AGAGCTACTGCAGAAATTCAGCAACGAAAATCAAACCACTACTACAAGCTCAACAATTTCATTCCCCACGTCGAATTACTCGCTCCTCGAAAGCTCGTTG CAGAGGACGACTAGCAACAATCGTTACGGTCAGGGGACTCTGTTTCCTCCTCCGTCGTCCAAGGCATCGACGACGAAGCTTTACAGAGGAGTGAGGCAGA GGCACTGGGGGAAATGGGTGGCGGAGATTCGTTTGCCGCAGAACAGAATGAGAGTATGGCTTGGAACCTACGATACACCTGAAGCTGCGGCTTACGCCTA CGATCGCGCGGCTTATAAGCTTAGAGGAGAATATGCGAGATTGAATTTCCCCAATCTAGAGGAAAATTCAAAATTAGGGGTTTTGGATTCTGCGAAATTG AATTCTGTTAGGAGTTCCGTGGATGCCAAGATTCAGTCCATCTGCCAGAAATTGAAACGGGAGAGAGCTAAGAAGATTGCCGCCAAGAAACTTAACGACA GCAAGACGGATAAAAATAACGGCAGAAGTGTCGTTGAGACTCTGCCGGCCAAGGTAGAAGTGAATTCGTCTTCTCCGTCTCTGTCTCCGTCTACATCGAC GTCCACTAGCTGTGGAAACTCGCCGAAGTCGTTGGAAACGGAGTATATGGTTATGGTGCCGCCTAAGGAGATGGATATGGACGGTGGATTTTCGCTGGCG AGAATGCCGTCTTACGATCCTGAGCTGATCTGGGAGGTTCTCCTTGCCAACTGA
AA sequence Show only first row Show all	>Lus10003889 pacid=23144340 polypeptide=Lus10003889 locus=Lus10003889.g ID=Lus10003889.BGIv1.0 annot-version=v1.0 MEALCGSNNNNPSDMDIGTSLSQLILMGGAGSNTLDSIFSFCHHYPQFSSSSSAMEPLGSSVYLRQRELLQKFSNENQTTTTSSTISFPTSNYSLLESSL QRTTSNNRYGQGTLFPPPSSKASTTKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTPEAAAYAYDRAAYKLRGEYARLNFPNLEENSKLGVLDSAKL NSVRSSVDAKIQSICQKLKRERAKKIAAKKLNDSKTDKNNGRSVVETLPAKVEVNSSSPSLSPSTSTSTSCGNSPKSLETEYMVMVPPKEMDMDGGFSLA RMPSYDPELIWEVLLAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003889 [exp]	0	1
					Lus10000028 [exp]	3.0	0.9590
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028073 [exp]	4.6	0.9248
					Lus10006075 [exp]	5.3	0.9473
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	15.1	0.9233
					Lus10015828 [exp]	16.7	0.9206
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	19.1	0.9179
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10010281 [exp]	19.1	0.8827
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10019409 [exp]	20.8	0.8549
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	21.2	0.9139
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10040738 [exp]	23.8	0.7515

Compare expression of checked genes

Lus10003889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.