Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41800 667 / 0 Transmembrane amino acid transporter family protein (.1) AT1G08230 381 / 2e-129 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G40780 153 / 1e-41 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 140 / 5e-37 Transmembrane amino acid transporter family protein (.1) AT2G39890 134 / 1e-34 ATPROT1, ProT1 proline transporter 1 (.1.2) AT3G55740 129 / 6e-33 ATPROT2, ProT2 proline transporter 2 (.1.2) AT2G36590 126 / 7e-32 ATPROT3, ProT3 proline transporter 3 (.1) AT1G67640 125 / 1e-31 Transmembrane amino acid transporter family protein (.1) AT1G24400 122 / 2e-30 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G61270 121 / 6e-30 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001908 [exp] 508 / 6e-180 AT5G41800 369 / 3e-125 Transmembrane amino acid transporter family protein (.1) Lus10038639 [exp] 384 / 3e-130 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10009386 [exp] 296 / 5e-96 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10037913 [exp] 177 / 7e-51 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10038640 [exp] 153 / 5e-42 AT1G08230 208 / 7e-63 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10028251 [exp] 134 / 6e-34 AT3G55740 676 / 0.0 proline transporter 2 (.1.2) Lus10040238 [exp] 130 / 5e-33 AT3G55740 673 / 0.0 proline transporter 2 (.1.2) Lus10009877 [exp] 130 / 1e-32 AT2G39890 700 / 0.0 proline transporter 1 (.1.2) Lus10022329 [exp] 129 / 1e-32 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G093600 [exp] 680 / 0 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.003G138100 [exp] 666 / 0 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G026600 [exp] 412 / 3e-141 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026700 [exp] 386 / 3e-131 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 374 / 1e-126 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.005G219300 [exp] 190 / 2e-55 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G179000 [exp] 148 / 7e-40 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.015G091600 [exp] 137 / 8e-36 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 130 / 2e-33 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G055800 [exp] 130 / 3e-33 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10003903 pacid=23144339 polypeptide=Lus10003903 locus=Lus10003903.g ID=Lus10003903.BGIv1.0 annot-version=v1.0 ATGGCGGAGCCTCCTAAGCCGGACGCCTTCCCGGAATCCTCCCGGGACAACGATGCCGGCGCCAATTTCGTCCTCGAATCCAAGGGGCAGTGGTGGCACG CCGGTTATCACCTGACGACGGCGATAGTGGGGCCTACGATCCTGACCTTGCCGTACGCTTTCAGGGGGATGGGATGGGTTTTGGGGATCTCGAGCTTGAC CGCCATGGGTATCATCTCCTTCTACTCTTACTACCTGATGTCGTTAGTCCTCGACTTCTGCGAGAGAGACGGCCGCCGCCACATCCGTTTCCGGGAGCTC GCCGCGGACGTCTTGGGGTCTGGATGGATGTTTTACTTCGTAATATCAATACAAACGGCCATTAATACTGGGATCAGCATCGGCACCCTTCTTCTAGCAG GCGAATGCCTTCAGATAATGTACTCGGAGCTGTCACCACATGGATCAATGAAGCTGTATGAGTTCATTGCAATAGTGACGGGAGTCATGATAGTTCTAGC TCAGATGCCGTCTTTCCACTCCCTCAGGCACATCAACTTGGCTTCTTTACTCCTCAGCTTTGGCTACACTTTCCTCGTTGTTGCTGCTTGTATCTATGCA GGTGTGTCGAAAAATGCACCTAAGAGGGACTATACTTTAGAGTCAGAAGACTCCCTCAAAGTCTTCAGTGCTTTCTCTTCAATTTCCATTATAGCTGCCA TCTTTGGGAATGGCATCTTGCCTGAGATCCAGGCAACTCTAGCTCCACCGGCCACTGGCAAGATGCTGAAAGGGCTAGTAATGTGCTACAGTGTGATCTT AGTGACATTCTACTCTTCAAGTTCCAACATCATCCAAAACTTCCTCCCTGATCAAGGCCCTGCCTTGGCCCCAACTTGGGTTCTTGGTGGTGCGACTGTC TGTGTGCTTTTCCAGCTTCTCGCCATTGGTCTGGTGTATTCTCAAGTAGCATTTGAGGTGATGGAAAAGAAGTCAGCTGACACAAGTAAAGGGATGTTTT CGTTGAGGAACTTGATCCCTAGGATAATCCTTCGATCTCTTTACATGGCATCCTGCGGGTTTGTGGCAGCGATGCTTCCGTTTTTCGGAGACATAAATGG GATAGTTGGAGCACTTGGGTTCATTCCTCTGGATTTCATCCTCCCAATGCTCCTCTATAACATGACTTACAGACCTTCCAAATCCTCTGGAACGTATTGG ATCAATATGGTCATTATGGTAGTGTTTTCAGGGGTAGGTCTTTTGGGGGCTTTCGCTTCTATTAGGAAGCTTGTCCTTGATGCTCACAGATTTAAACTTT TCAGTAGTGATGTAGTTGATTGA
AA sequence Show only first row Show all	>Lus10003903 pacid=23144339 polypeptide=Lus10003903 locus=Lus10003903.g ID=Lus10003903.BGIv1.0 annot-version=v1.0 MAEPPKPDAFPESSRDNDAGANFVLESKGQWWHAGYHLTTAIVGPTILTLPYAFRGMGWVLGISSLTAMGIISFYSYYLMSLVLDFCERDGRRHIRFREL AADVLGSGWMFYFVISIQTAINTGISIGTLLLAGECLQIMYSELSPHGSMKLYEFIAIVTGVMIVLAQMPSFHSLRHINLASLLLSFGYTFLVVAACIYA GVSKNAPKRDYTLESEDSLKVFSAFSSISIIAAIFGNGILPEIQATLAPPATGKMLKGLVMCYSVILVTFYSSSSNIIQNFLPDQGPALAPTWVLGGATV CVLFQLLAIGLVYSQVAFEVMEKKSADTSKGMFSLRNLIPRIILRSLYMASCGFVAAMLPFFGDINGIVGALGFIPLDFILPMLLYNMTYRPSKSSGTYW INMVIMVVFSGVGLLGAFASIRKLVLDAHRFKLFSSDVVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41800			Transmembrane amino acid trans...		Lus10003903 [exp]	0	1
AT1G27060			Regulator of chromosome conden...		Lus10037219 [exp]	1.4	0.9256
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	5.6	0.9533
AT3G53490			unknown protein		Lus10015041 [exp]	7.9	0.9255
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10014587 [exp]	17.3	0.9239
AT4G15563			unknown protein		Lus10012807 [exp]	17.6	0.9016
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	19.9	0.9192
AT5G07630			lipid transporters (.1)		Lus10038931 [exp]	22.5	0.8907
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	24.0	0.9253
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	25.8	0.9248
AT1G03290			unknown protein		Lus10028005 [exp]	26.1	0.9113

Compare expression of checked genes

Lus10003903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.