Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 131 / 5e-38 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47220 107 / 2e-28 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 105 / 1e-27 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G51190 98 / 3e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 97 / 5e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 97 / 9e-25 AP2_ERF RAP2.6L related to AP2 6l (.1) AT3G23230 94 / 2e-24 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT3G23240 96 / 3e-24 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT5G61890 95 / 8e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G43410 89 / 9e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030261 [exp] 280 / 1e-96 AT2G44840 125 / 1e-35 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 154 / 7e-47 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10029334 [exp] 153 / 7e-47 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 152 / 1e-46 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 149 / 4e-45 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10016211 [exp] 146 / 5e-44 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 145 / 1e-43 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016224 [exp] 141 / 5e-42 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1) Lus10029319 [exp] 135 / 3e-40 AT2G44840 142 / 6e-43 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046700 [exp] 142 / 2e-42 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G046600 [exp] 133 / 1e-38 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 131 / 2e-38 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046800 [exp] 120 / 4e-35 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.014G046900 [exp] 115 / 9e-32 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.003G150700 [exp] 114 / 4e-31 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.001G079900 [exp] 114 / 5e-31 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.004G051700 [exp] 108 / 2e-29 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.003G081200 [exp] 107 / 2e-28 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.001G154100 [exp] 105 / 1e-27 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10004011 pacid=23153371 polypeptide=Lus10004011 locus=Lus10004011.g ID=Lus10004011.BGIv1.0 annot-version=v1.0 ATGGAATCACTGGAATCCATTCGGCAGCACCTTTTGGACGACGATTCGTTGACCGATCATTCAGCATCGCCGCCGTTTTCGTACTCGCAGAGCCTCAGCT TCGACAGAGTCATTTCCGGCGCCGCAAACTGGAGCGACATACTGTCCCAGGTAGACAGTAAGCCGCCGCCGCCACCCGTCGTACCGAGGAAGGCCTCGGG GAACTACAAGGGAGTAAGAAGAAGGCCATGGGGGAAGTACGCGGCAGAGATTCGAGACCCGAAGCGAAATAACGGCGCGAGGATATGGCTGGGGACTTAC GAGAATCCCGAGGATGCAGCTCTGGCTTACGATCGAGCCGCTTTTCGGCTTCGGGGAGCCAAAGCGAAGCTGAATTTTCCCCATTTGGTCGGCTCGAGTA CAGATGATGATCATTACGAGCCGGTTCGTGTTACGGCCAGTAGAAAGAGATGCTCGCGTAGAGACGAGGAGTCGCCGCTGTCGTGGTCTTCCTCTCCGAT GCTGTCATTTTCGGGATCGGAAAATGATTCTTCTGCCGGTGGGAAACGGAGGTTGACGGACTTGGTGTTAAACGTTGAAGATTATTGGGACTCGGATCAA GAGTACATAATGCCACGTGGCAGATAA
AA sequence Show only first row Show all	>Lus10004011 pacid=23153371 polypeptide=Lus10004011 locus=Lus10004011.g ID=Lus10004011.BGIv1.0 annot-version=v1.0 MESLESIRQHLLDDDSLTDHSASPPFSYSQSLSFDRVISGAANWSDILSQVDSKPPPPPVVPRKASGNYKGVRRRPWGKYAAEIRDPKRNNGARIWLGTY ENPEDAALAYDRAAFRLRGAKAKLNFPHLVGSSTDDDHYEPVRVTASRKRCSRRDEESPLSWSSSPMLSFSGSENDSSAGGKRRLTDLVLNVEDYWDSDQ EYIMPRGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10004011 [exp]	0	1
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10009364 [exp]	6.2	0.8149
AT5G46590	NAC	ANAC096	NAC domain containing protein ...		Lus10010294 [exp]	6.3	0.7774
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10030261 [exp]	10.2	0.8325
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	15.5	0.7947
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10001984 [exp]	19.9	0.7381
					Lus10003693 [exp]	20.3	0.7286
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10035071 [exp]	20.5	0.7624
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	21.1	0.7920
AT3G11760			unknown protein		Lus10013598 [exp]	23.0	0.7676
AT5G54165			unknown protein		Lus10023231 [exp]	24.5	0.7815

Compare expression of checked genes

Lus10004011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.