Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66230 241 / 3e-78 MYB ATMYB20 myb domain protein 20 (.1) AT5G16600 236 / 1e-75 MYB ATMYB43 myb domain protein 43 (.1) AT4G22680 220 / 2e-70 MYB ATMYB85 myb domain protein 85 (.1) AT4G12350 216 / 2e-68 MYB ATMYB42 myb domain protein 42 (.1) AT5G14340 205 / 2e-64 MYB AtMYB40 myb domain protein 40 (.1) AT3G02940 196 / 4e-60 MYB ATMYB107 myb domain protein 107 (.1) AT5G62320 192 / 7e-60 MYB ATMYB99, AtMYBCU15 myb domain protein 99 (.1) AT5G15310 193 / 4e-59 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G61250 192 / 5e-59 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G16770 191 / 3e-58 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002296 [exp] 418 / 1e-146 AT1G66230 263 / 1e-86 myb domain protein 20 (.1) Lus10004043 [exp] 405 / 1e-141 AT1G66230 264 / 4e-87 myb domain protein 20 (.1) Lus10002297 [exp] 253 / 7e-83 AT5G16600 208 / 1e-65 myb domain protein 43 (.1) Lus10027197 [exp] 227 / 2e-73 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10038913 [exp] 227 / 3e-73 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10032226 [exp] 225 / 1e-71 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10024589 [exp] 224 / 3e-71 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10010974 [exp] 213 / 1e-68 AT5G16600 215 / 8e-70 myb domain protein 43 (.1) Lus10032117 [exp] 209 / 7e-66 AT5G14340 244 / 9e-81 myb domain protein 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130300 [exp] 250 / 3e-81 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.004G086300 [exp] 245 / 2e-79 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.015G129100 [exp] 227 / 6e-73 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.012G127700 [exp] 225 / 4e-72 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.001G118800 [exp] 224 / 1e-71 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.003G114100 [exp] 224 / 1e-71 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.001G336700 [exp] 211 / 1e-66 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.008G180800 [exp] 201 / 1e-62 AT5G14340 229 / 1e-74 myb domain protein 40 (.1) Potri.007G093900 [exp] 202 / 2e-62 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 198 / 9e-61 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004042 pacid=23156725 polypeptide=Lus10004042 locus=Lus10004042.g ID=Lus10004042.BGIv1.0 annot-version=v1.0 ATGGGAAGACAACCTTGCTGTGACAAAGTAGGACTGAAGAAAGGTCCATGGACTGGTGACGAAGACCGTAAGCTCGCCAACTTCATCCTCACTCATGGCC AATTCTGCTGGCGTTCTGTCCCTAAGCTTTCTGGGTTGTTGAGATGTGGGAAGAGCTGCAGACTGAGATGGATTAACTACCTAAGGCCTGATTTGAAGAG AGGACTCCTCTCTGAATCTGAGGAGAAACTTGTCATTGATCTTCATGCTCAGCTTGGCAACAGGTGGTCAAAAATTGCATCGCACATGCCAGGAAGAACA GATAACGAAATAAAAAATCAATGGAACACCCATATTAAGAAAAAGCTGAGAGAAATGGGCATCGATCCACTTACCCACCAGCCTTTACTTCCTCCTCCTC CTCCTCATGAACAAGAGTCTTGTAGCAAAGACATTAGTACAATTGAACAAGATCCTGTACTTATGAACATTAATGTCCCCTTGGACTCTGCCACGGAGGC GACATCATCGATTTCATCATCGTCCAGCTCGACAATCCTGGACAACGGTCTCCAATTGGCAATCACCCAGGTAGCCAACCAGCTGGATGTCACCGATTAC CACAATGTTGAACAAGTGCTAACTTATGACGATGGGTTCTGCTTAGAGGATGTTCTATTAGTTGAGCCACCTGAGATTATTACTAATGACTGCGGTAACA ATAATAATATTGATATTAACCTCGAATTTTCACCACCGGCTAATTTGTCTTCAAGTTCGTCAAAAGGTACTAATAATCTCGCCGACGACTCGGCTAATAC GAATGGTGGTAATGACAATACTACCCTTGAAGCTGCTGAACACGAGCGCTGGTGGGCTCCAAAGTTACCGACTAAGGAGGACCAGCTAATGGGCTTGTGG GCCGATGACGATTTGGGCTGCTGGGATTTGGAGGTTAATGACGAGTTTAACTGCGAGATAGAGATGATCGCTGCTAGTCTTCGGAGTTGTCTGGACGACG ACGATTATTCTTCACGGACCTGTAAATGA
AA sequence Show only first row Show all	>Lus10004042 pacid=23156725 polypeptide=Lus10004042 locus=Lus10004042.g ID=Lus10004042.BGIv1.0 annot-version=v1.0 MGRQPCCDKVGLKKGPWTGDEDRKLANFILTHGQFCWRSVPKLSGLLRCGKSCRLRWINYLRPDLKRGLLSESEEKLVIDLHAQLGNRWSKIASHMPGRT DNEIKNQWNTHIKKKLREMGIDPLTHQPLLPPPPPHEQESCSKDISTIEQDPVLMNINVPLDSATEATSSISSSSSSTILDNGLQLAITQVANQLDVTDY HNVEQVLTYDDGFCLEDVLLVEPPEIITNDCGNNNNIDINLEFSPPANLSSSSSKGTNNLADDSANTNGGNDNTTLEAAEHERWWAPKLPTKEDQLMGLW ADDDLGCWDLEVNDEFNCEIEMIAASLRSCLDDDDYSSRTCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004042 [exp]	0	1
					Lus10011962 [exp]	1.0	1.0000
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	1.4	1.0000
					Lus10022805 [exp]	1.7	1.0000
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	2.0	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	2.2	1.0000
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	2.4	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	2.6	1.0000
					Lus10030558 [exp]	2.8	1.0000
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030911 [exp]	3.0	1.0000
					Lus10033534 [exp]	3.2	1.0000

Compare expression of checked genes

Lus10004042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.