Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66230 249 / 3e-81 MYB ATMYB20 myb domain protein 20 (.1) AT5G16600 239 / 6e-77 MYB ATMYB43 myb domain protein 43 (.1) AT4G22680 232 / 1e-74 MYB ATMYB85 myb domain protein 85 (.1) AT4G12350 230 / 9e-74 MYB ATMYB42 myb domain protein 42 (.1) AT5G14340 201 / 7e-63 MYB AtMYB40 myb domain protein 40 (.1) AT5G62320 201 / 8e-63 MYB ATMYB99, AtMYBCU15 myb domain protein 99 (.1) AT3G02940 197 / 2e-60 MYB ATMYB107 myb domain protein 107 (.1) AT3G61250 196 / 2e-60 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G28110 195 / 3e-60 MYB ATMYB41 myb domain protein 41 (.1) AT5G10280 196 / 4e-60 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002296 [exp] 513 / 0 AT1G66230 263 / 1e-86 myb domain protein 20 (.1) Lus10004042 [exp] 423 / 7e-149 AT1G66230 251 / 2e-81 myb domain protein 20 (.1) Lus10002297 [exp] 241 / 7e-78 AT5G16600 208 / 1e-65 myb domain protein 43 (.1) Lus10027197 [exp] 238 / 1e-77 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10038913 [exp] 238 / 2e-77 AT1G66230 247 / 3e-82 myb domain protein 20 (.1) Lus10032226 [exp] 236 / 6e-76 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10024589 [exp] 236 / 9e-76 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10010974 [exp] 226 / 2e-73 AT5G16600 215 / 8e-70 myb domain protein 43 (.1) Lus10032117 [exp] 206 / 2e-64 AT5G14340 244 / 9e-81 myb domain protein 40 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G086300 [exp] 249 / 8e-81 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.017G130300 [exp] 246 / 1e-79 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.015G129100 [exp] 238 / 4e-77 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.001G118800 [exp] 236 / 3e-76 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.003G114100 [exp] 236 / 3e-76 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.012G127700 [exp] 236 / 4e-76 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.001G336700 [exp] 207 / 6e-65 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.008G180800 [exp] 202 / 4e-63 AT5G14340 229 / 1e-74 myb domain protein 40 (.1) Potri.007G093900 [exp] 202 / 4e-62 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 197 / 2e-60 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004043 pacid=23156714 polypeptide=Lus10004043 locus=Lus10004043.g ID=Lus10004043.BGIv1.0 annot-version=v1.0 ATGGGAAGACAACCTTGCTGTGACAAAGTAGGACTGAAGAAAGGTCCATGGACTGCTGATGAAGACCGTAAGCTCATCAACTTCATCCTCACCCATGGCC AGTGCTGCTGGCGTGCTGTCCCTAAGCTTTCTGGGCTGTTGAGATGTGGGAAGAGCTGCAGGCTGAGATGGACTAACTATTTGAGGCCTGATTTGAAGAG AGGGCTCCTCTCTGAATCTGAAGAGAAACTTGTCATTGATCTTCATGCTCAACTTGGCAACAGGTGGTCAAAAATTGCATCACAAATGCCAGGAAGAACA GACAACGAAATAAAAAATCATTGGAACACCCATATCAAGAAAAAGCTTCGCAAAATGGGGATCGACCCATGCACCCACCAGCCTTTACTTCCCACCACCA CCACTGACACTACTACTCAAGAACAACAAGAACAACACTCTTCCAGCAAAGACATCAGTACAAACGAACCAGACCCTCTAGTACTTAACACTGTCTCCCC GGAATCTGCCACGGAGGCAACTTCTTCGCTGACATCGTCGATATCATCATCGTCCAGCTCGACAATCGTGGACGACGATCTGCAATCTGCGATCACCCAG TTGGCCAACCAGCTCGATGTCCCCGATTACCGCAATGCTATGGAGGAAGTGCTGAATTATGGCGATATTGGGTTCGGCTTAGAGGAAGTTCCATTGGTTG AGTTTGAGCCACATGAGATTATTACTAATGACTGCAGTAAGAATAATAATATTGACATTGACGTGGAATTTTCACCACCGGCTAATTTGTCTTCAAGTTC GTCATCATGTATTAATGATCACACTAACGACTCGGCTAATGGGAATGGTGGTAATGACTATAATGTCCTTGGAGCTGAAGACGATTGCTGGTGGGCTTCA CAGTTGACGACGAAGGAGGGCCAGCTAATGGGCTTGTGGGCCGATGACGATTTGGGCTGCTGGGATTTGGCGGTTAATGACGAGATTAACTGCGAGATAC AGATGATGGCTGCTAGTCTTGGGAGTTGTCTGGATGCTAATGATGACTATTTTTCATGGGCCAGATAA
AA sequence Show only first row Show all	>Lus10004043 pacid=23156714 polypeptide=Lus10004043 locus=Lus10004043.g ID=Lus10004043.BGIv1.0 annot-version=v1.0 MGRQPCCDKVGLKKGPWTADEDRKLINFILTHGQCCWRAVPKLSGLLRCGKSCRLRWTNYLRPDLKRGLLSESEEKLVIDLHAQLGNRWSKIASQMPGRT DNEIKNHWNTHIKKKLRKMGIDPCTHQPLLPTTTTDTTTQEQQEQHSSSKDISTNEPDPLVLNTVSPESATEATSSLTSSISSSSSSTIVDDDLQSAITQ LANQLDVPDYRNAMEEVLNYGDIGFGLEEVPLVEFEPHEIITNDCSKNNNIDIDVEFSPPANLSSSSSSCINDHTNDSANGNGGNDYNVLGAEDDCWWAS QLTTKEGQLMGLWADDDLGCWDLAVNDEINCEIQMMAASLGSCLDANDDYFSWAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004043 [exp]	0	1
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10002296 [exp]	4.1	0.8713
AT5G24090		ATCHIA	chitinase A (.1)		Lus10037985 [exp]	4.2	0.8037
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023946 [exp]	6.7	0.8428
AT4G03230			S-locus lectin protein kinase ...		Lus10031603 [exp]	12.2	0.8451
AT3G26880			Plant self-incompatibility pro...		Lus10025935 [exp]	16.9	0.7511
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10023968 [exp]	24.0	0.7702
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	28.1	0.8300
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	29.9	0.8089
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10021122 [exp]	31.3	0.8194
AT4G32110			Beta-1,3-N-Acetylglucosaminylt...		Lus10007569 [exp]	33.0	0.7268

Compare expression of checked genes

Lus10004043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.