Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 308 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 306 / 4e-87 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 297 / 4e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 298 / 3e-84 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46450 291 / 1e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 291 / 1e-82 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46260 291 / 3e-82 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 291 / 4e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT2G14080 290 / 8e-82 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 289 / 9e-82 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016029 [exp] 655 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 604 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 585 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 575 / 0 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 573 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 552 / 3e-178 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028058 [exp] 549 / 6e-178 AT4G12010 367 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 546 / 5e-177 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 531 / 2e-170 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 429 / 1e-132 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 412 / 1e-126 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 400 / 1e-121 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 380 / 1e-113 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 370 / 9e-110 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 352 / 2e-106 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.004G088500 [exp] 360 / 9e-106 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G069500 [exp] 356 / 6e-104 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 351 / 7e-104 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G098500 [exp] 345 / 4e-103 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10004075 pacid=23156743 polypeptide=Lus10004075 locus=Lus10004075.g ID=Lus10004075.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCCTCATCCTCTTCCCCTTCTTCCCGGACATGGGACTACGACGTATTTCTGTCTTTCAGTGGCGATAAAATGCGGACGGGTTTTGCCAGAA AAGTTTTCCGCGCTTTGACCGAAAAGAATATCAAAACCTTCATGGACACCGAGTATGAGAAAACAGAGAGCATCACGGAACTGGTGTCAATCGTGAAAGA CTCGCAAATGTCGGTGGTGTTACCGGTTTTCTACAAGGTAGATCCATCGGATGTCACGGATGACACCGGTAGCTTCGCTGCAGCAATTGATCGTCTTGAA GGACGCAGCTTGGATGTGAAGAGGGAATGGAGGCACGCACTTAGAGTAATTGCTGATAAGGCTGGCCTCTGCTACCCGTCCGATGAGTGCAGGGAGAAAG ATATATTGATCGAAGTTATCGTTGACAATGTCAATGAGTTGCTAGAAGAAATGGCAGAAAGCCGTTATGTATCCACGACGACTGACAGATGGGTCGGAAT GGATTCACGAGTTGAAGATATTAAACAGTTGCCAGAGATGAAAGCATCAAATGATCATGTTAGCATCATTGGCCTTTGGGGTATGGGTGGTACTGGCAAG ACGGCTACTGCTCGAGCTTTGCATAAAAATCTAGCACCCTCCCATGGTTGCAAGCATCATTTCCTTTCCTACATCAACAACAGATGGGAAGAAGGGCGTG GATTGGATGATTTACTAAAAGAACTCTATTCCGCCTTGTTGTCCGAGGACATCACGAGACCAGACTTGCGAAAAAAGTTCAAAAGGGTACGTCTCAAGCG GGGGAGAGTGTTTGTCGTTCTGGACGAAGTCGAAACAGCGATACAATTAAAAGAGTTGCTGCTGAATGAAGTGTGTAATCTCGACAATCTATTTGCACCG GGGAGCATAGTCATTGTCACGACGAGAAATCGAGACGTGCTCGACAGTGTAGAGGCTAATAGGGTAATTTACCCTATCCAAGGACTGGTTGATCCTCAAG AATCGCTTCAGCTCTTTAGCTTGCAAGCATTTGGACAAGACTTGCCGCCTGGTGATGAGGTGGATTGGAAGTATCGGTTCTCGACTAAAGCTGTGTCATA TTGCAAAGGAAACCCTTTAGCTCTGATGGTTTTGGCAGGTGCATTGGTCAACAAGGACGAAGCGTACTGGATTAGCTTCCTTGACGGGTTGGGAAAGAGT CAAGAGGCAGACATATATCTTCTTCTTCGAAGAAGCTACGATAAGCTAGAGAGCAATCATCACAAGAACATGTTTCTGGACATTGCGTGTTTCTTCAACA GAAGTCTTAAATCTAGATTGACGAAGCTAATGCAAAACATGTATAAATCTCTACATAGATGTATAATGGATTTGGTTGGTAGGTCCTTATTAGTATACAA CAAGTTCGATAATGATGCTGATGATGGGATGATTGAGGTGCATGATCTGCTACGAGAGATGGCCTGGAAAATCATCAACGAGGAACGTGATCCTAGAAAG CGTAGCAGGTTGGAGGATCCTGAAGATATTTGCACTGTATTGACCAAAGGAATTAAGGCGGATGGAGCTATGGAAGGTTTAAGTATGGACCTTACTAAAG CCGAAGGGATGTGCTTGAAATCGGATGCTTTCCTGGGGATGGACCTTCTTCGATGGTTCAGGTTCTACTGGCCAGGAGGTTATTTTACGCGTCAGGATAA TATCTTCAAAATACTCCTACCCAATGGCCTTGATTATCTTCCTCGAAAGTTACGGATTCTGAACTGGGATTCATTCCCTTATACATCCCTGCCATCCCAA TACTCTCCAAGAAAACTCGTCGAACTCACCATTCGCTACAGTGCCATGGAGCACTGCTGGGAAGGAGTCCAGGATCTCGATAATCTGAGGTGGTTGAACT TCACTGGATGCATAAACCTAGAGGAAGTTCCAGATCTGTCTAAGGCTCCAAATCTTGAGGCACTGATACTAACAGGATGCACAAGCCTAGTGGAATTACC TATGCAAATTCAAGAGCTTGGCAAGTTGGAGACCCTTCAGGTCGGACACTGCGAAAACCTGGAGCGTCTCCCGTCAGAATTAGGCTCCCCATTGCTCCAG TTCCTTCACCTGTCTCATTGTCCCAAGCTTAGCCGTTGCCCTAAGATCACTAAAGGGGAATGGAAAATCTTGGACCTAGACCACACTCCAATCACACAGC TACCTGATGCAGTTTGCAATTTCAAACGGGCTGATTTTCTGAGTCTCTACGGTCAACACATCACACACTTCCCACAGTTTTCTTCTCAACCAGAGTCAAC CTTCTTGAATGAGCTCCGGCTATCTAAAACCTCCATCGAATCCATCACGCCAACTACTACTACGAAAATTGGCCGGCTCGAGTTGAATGAAAACTCGAAG CTTTACCAACTGTCGAGCCATACTTGGAGAATGGTCTCCACTGAACTTGTCATTAGACTATGCGAAAAGCTGGACACTTTGCCGGAAATACCGGAGGAAG AAAATACACTAACTACTCTGGAGTTGAACTGCTGTGTAGGTCTTCAGGGACTGCCATCAAGTATCGGTAACCTGCGGTGTCTAGTGAATCTCTCGTTGAT TGGATGTCACGAGATTATTGTATTACCTCCCTCTGTTGAGGAACTTGGGCAGCTGTGCAAATTAGACCTGAGTTTCTGCTGGAGTCTTGAGTCTCTCCCA GAGACGATCTATCAACTTGCTCAGTTGACAGAACTTTACTTGATGGGTTGTTTCCGCATTCCTGGTTTACCCACACTTCCATCCAGTCTCAGGCTTTTAG GCGCGGATGGTTGTTGGTCGCTGCAGAGTTTGCCAGAGGATATAACCAGCCTCGATTTTTATCATCTGAGCTTTGCAGGTTGCTTGAAATTGGGTAGCCA GAAGCTCTCCGAAATCGCGGATGGTTATTTAGCGACTCGAACTACTTCCACCTTCGACCCTAAGAAAGTGAATACAATCAGGGAATGTTGTTTGAAACAG GATGGATTTAGAGGTGACTCTTTGGCTATGTCTCCGGCACTCAAGTAA
AA sequence Show only first row Show all	>Lus10004075 pacid=23156743 polypeptide=Lus10004075 locus=Lus10004075.g ID=Lus10004075.BGIv1.0 annot-version=v1.0 MASASSSSPSSRTWDYDVFLSFSGDKMRTGFARKVFRALTEKNIKTFMDTEYEKTESITELVSIVKDSQMSVVLPVFYKVDPSDVTDDTGSFAAAIDRLE GRSLDVKREWRHALRVIADKAGLCYPSDECREKDILIEVIVDNVNELLEEMAESRYVSTTTDRWVGMDSRVEDIKQLPEMKASNDHVSIIGLWGMGGTGK TATARALHKNLAPSHGCKHHFLSYINNRWEEGRGLDDLLKELYSALLSEDITRPDLRKKFKRVRLKRGRVFVVLDEVETAIQLKELLLNEVCNLDNLFAP GSIVIVTTRNRDVLDSVEANRVIYPIQGLVDPQESLQLFSLQAFGQDLPPGDEVDWKYRFSTKAVSYCKGNPLALMVLAGALVNKDEAYWISFLDGLGKS QEADIYLLLRRSYDKLESNHHKNMFLDIACFFNRSLKSRLTKLMQNMYKSLHRCIMDLVGRSLLVYNKFDNDADDGMIEVHDLLREMAWKIINEERDPRK RSRLEDPEDICTVLTKGIKADGAMEGLSMDLTKAEGMCLKSDAFLGMDLLRWFRFYWPGGYFTRQDNIFKILLPNGLDYLPRKLRILNWDSFPYTSLPSQ YSPRKLVELTIRYSAMEHCWEGVQDLDNLRWLNFTGCINLEEVPDLSKAPNLEALILTGCTSLVELPMQIQELGKLETLQVGHCENLERLPSELGSPLLQ FLHLSHCPKLSRCPKITKGEWKILDLDHTPITQLPDAVCNFKRADFLSLYGQHITHFPQFSSQPESTFLNELRLSKTSIESITPTTTTKIGRLELNENSK LYQLSSHTWRMVSTELVIRLCEKLDTLPEIPEEENTLTTLELNCCVGLQGLPSSIGNLRCLVNLSLIGCHEIIVLPPSVEELGQLCKLDLSFCWSLESLP ETIYQLAQLTELYLMGCFRIPGLPTLPSSLRLLGADGCWSLQSLPEDITSLDFYHLSFAGCLKLGSQKLSEIADGYLATRTTSTFDPKKVNTIRECCLKQ DGFRGDSLAMSPALK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10004075 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10028060 [exp]	3.5	0.9149
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	4.8	0.9248
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10016144 [exp]	7.3	0.8986
AT3G07870			F-box and associated interacti...		Lus10012358 [exp]	7.3	0.8540
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10031933 [exp]	8.9	0.9025
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027989 [exp]	9.6	0.8360
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	11.1	0.9068
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029838 [exp]	12.0	0.8873
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	14.8	0.8896
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	17.0	0.9043

Compare expression of checked genes

Lus10004075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.