Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 311 / 1e-90 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 278 / 1e-77 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 169 / 6e-43 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58390 163 / 5e-41 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 160 / 4e-40 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G53350 155 / 1e-38 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 143 / 1e-34 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 141 / 5e-34 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 139 / 2e-33 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 136 / 2e-32 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004127 [exp] 1753 / 0 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 1118 / 0 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10003571 [exp] 1093 / 0 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 1072 / 0 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 878 / 0 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10029705 [exp] 414 / 2e-137 AT3G14460 112 / 5e-27 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 340 / 2e-99 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 328 / 4e-95 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 318 / 2e-92 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123500 [exp] 539 / 4e-177 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 533 / 7e-175 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121876 [exp] 529 / 3e-173 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 528 / 1e-172 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 525 / 5e-172 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122900 [exp] 516 / 2e-168 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.015G121800 [exp] 508 / 1e-164 AT3G14470 377 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121900 [exp] 504 / 3e-163 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121851 [exp] 482 / 8e-157 AT3G14470 348 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 473 / 4e-153 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10004126 pacid=23157519 polypeptide=Lus10004126 locus=Lus10004126.g ID=Lus10004126.BGIv1.0 annot-version=v1.0 ATGGCTGCTCAGATTGTTTCATCAATCATCACCCAGCTGGGATCCCTCCTGGCTGAGGACCTGACGCGAAGAGGGATGCTGGTCGTAGGTGCGGAGAAAG ATGTGAAGAAGCTGGCATCCACTTTATCGGCCATTGAAGTTATGCTCTTGGATGCCGAAGTGAAGCAGCTTACTAACAAAGATGCCGAAGTATGGGTGAC GAAGCTCAAGAACGTGTGCTACAAGATCGACGATGTGCTGGACGAGTGGACAACCGAAATCCTCAAGCACCGGCTTGCAAATGAGGAGTATGGCAAAGGC TGGTTGAAGCTGAAGCTGCTTAAAATTTCCAATCTGCTTAAACGAGTATGGCTTTCTGATTACTATTTCTCTCCTCATGACGTTTGTTTTCGTTGCGGTA TTGCTTCTAGGATCAAAGAACTGTATGAAGATCTTGAGAACCTAAATAAAGATACAAATATGCTCGGTTTTAGGCCTAAGCCAACTCCATCCTACAAAAG TTTGCAAACTAGCTCTGTTATAAAATCCTGGGATGTGAAAGGCAGAGAAGAAGAGACAGAGTTACTGAAGGGGAAGTTGCTACGAATTAGCGAGGTTGTA CAAAGTATCTCTATCCAAGGTGCTGGTGGACTTGGAAAAACCACATTAGCGAAACTGCTCTACAATGACGACGTTGTGGGAGGTCATTTCGACAAGAGAA TTTGGGTTTGTGTGTCCAATACTTTCGATCCAACAACGGTGGCTAAAACCATACTTGAGTCTCTTACTGGTTCTGCTCAACAAAGTAACACATTGTCAAT ATTGTTGGAGAAGATAAGCGAAATGACTAATGGCATGAGGTTCCTTTTAGTTCTCGACGATGTGTGGGAAGATAGTCAGAGGGAATGGGAAGAACTAAGG AGCGCTCTCACGTGCAACTCACCAGGGAGCAAGATCTTGATGACGACACGTAAAGGAGAGGTTTCTCGTGCATTAGGTTGCATCGAAGATGATGTGCTTC TGATTCGAAAGGTGCCTGAGGATGTATGTCGAGCTATTTTCACTCAGGTTGCATTTTACGGATGGAATGCGGAGGAGAAAGAATGTGTTGAAGGTTTCTG TAAAGATGTGGTGGCAAAATGTGCAGGTTCGCCGTTGGCTGCAAAAGTATTGGGAGGGGTCATGCAGTCCAAAAAGAGCAAAAGTGAATGGATTAACGTT CTAAAGAGTGAAATGTGGCACTTGGATCAAGTTAAGAAACAAGTTTTTGGTCCTTTGGCATTGAGTTCCTATGACTTGTCTCCAGATCTCAGACAGTGTT TTCAATTTTGTGTCGTCTTTCCTAAAGATTATCTAATGGATAAAGATCAATTAATTAAGTTGTGGATATCTCAAGGTTTTGTTGGAGCAAGTGGAACTCA AGAAGTGGAGGATATTGGTGAACAATATTTTCAAATTTTAACTGCGCGTTCCTTCTTTCAAGATATTCAAACAAAGAAATTGTTTCAAGGAATGGAGAAA ACAAATTTTAAGATGCATGATTTAGTGCATGATTTCGCACTAATGCTAAGTAAGGGTGAAAGTGTTATCAGAACAAGCAAAGACATGAAAGATATAGCCA CCAATGGTAGTGTGGTTCGTAATTTGAGTATATGTGATTACATATTCAAGGACGATTGTTCAATCAAAGGTTCTCTCTTCTCTTCAATGAAGGATTTGCG TTGCTTCATGACAAGTGATGTAGACAATATTGAACCTAAGGTTTGGGATAATTTGCGTGGCATAAGGTCCTTTGTTCTTATTGATAGTATGCTCAACAAA ATCCCATCGACGATAAATCAGTTGATCCATTTGAGGCATTTGGATTTGACCGATAACGTTGAGTTGGAAGAGTTACCTAAGGAAATATGCGAGCTTTACA ACTTATGGACGCTTATTATCAACTGGTGTGATAATTTGAAGAGGCTGCCTCTTGGAATGGGGGATAAACTAGTGAATCTAAAGCATCTGGAGAACGAGTT AGTACCAGCACCCCTTCCCAAGTCAATTGGGAGGTTAACTCGTCTCAAGACATTAACGAAGTTTAGTATCCATAAAGATCAAGCAAAAGGAGTAGTCTCA ATTGCTGATCTAAAGGACATGAACCAACTTCAGGGAAGTCTTCATGTGGTTGGCCTAAGTTATAATGTGGCAGGGAGTTACGAGGTGGAACAGGCTGATT TTGCCAATAAAACAGAGCTGACCTCTTTACATCTCCAATTTAGAGAGGTTGGTGAAGATAGTACGGACAATAAGGATGAAGAATTGTTGGAAGCTGTAAG ACCATCCACCAACTTGAAACAACTGTATATAAAACGTTATATGGGTTCCGTATATCCGAGCTGGATGGTGTCTCTCTCCAACTTAACTCACCTTGAATTT AAAGTTTGCAAAGAGGTGAAGTATCTACCTCATTTAGGGGGCCTGCCGTCTCTCGAAAAACTATCGTTTACACGATTGAACAAAGTAAAGAAAGTAGGTG TTGAGCTTCTTCTAGGACATGAACAGCAGCAATATGAGGAGGATATTGGAGCATTTCCGAAGCTGACGGTGCTGGCATTTGAGTTTATGGACGGCTGGGA AGAGTGGGATGATAGGATGCTATCTTCACCATCAGTGATGCCTCGGCTAAGTTCCTTGACTTTGATCGACTGCCAAGAGCTGAAGAAGTTGCCAGATGCA ATTCTCCAGAAACCGACACTCAAAAGGCTACAAGTGACAAGTTGCAACAGTGAGCCTCCTGAAATAGTGCTTAGTAAAGTATGGGACAACATCTCTCACA TCCCCACCATCATAATTGACGACTTCAACGTTCGAACCGGCAATACAATTTATCCTTTTTAA
AA sequence Show only first row Show all	>Lus10004126 pacid=23157519 polypeptide=Lus10004126 locus=Lus10004126.g ID=Lus10004126.BGIv1.0 annot-version=v1.0 MAAQIVSSIITQLGSLLAEDLTRRGMLVVGAEKDVKKLASTLSAIEVMLLDAEVKQLTNKDAEVWVTKLKNVCYKIDDVLDEWTTEILKHRLANEEYGKG WLKLKLLKISNLLKRVWLSDYYFSPHDVCFRCGIASRIKELYEDLENLNKDTNMLGFRPKPTPSYKSLQTSSVIKSWDVKGREEETELLKGKLLRISEVV QSISIQGAGGLGKTTLAKLLYNDDVVGGHFDKRIWVCVSNTFDPTTVAKTILESLTGSAQQSNTLSILLEKISEMTNGMRFLLVLDDVWEDSQREWEELR SALTCNSPGSKILMTTRKGEVSRALGCIEDDVLLIRKVPEDVCRAIFTQVAFYGWNAEEKECVEGFCKDVVAKCAGSPLAAKVLGGVMQSKKSKSEWINV LKSEMWHLDQVKKQVFGPLALSSYDLSPDLRQCFQFCVVFPKDYLMDKDQLIKLWISQGFVGASGTQEVEDIGEQYFQILTARSFFQDIQTKKLFQGMEK TNFKMHDLVHDFALMLSKGESVIRTSKDMKDIATNGSVVRNLSICDYIFKDDCSIKGSLFSSMKDLRCFMTSDVDNIEPKVWDNLRGIRSFVLIDSMLNK IPSTINQLIHLRHLDLTDNVELEELPKEICELYNLWTLIINWCDNLKRLPLGMGDKLVNLKHLENELVPAPLPKSIGRLTRLKTLTKFSIHKDQAKGVVS IADLKDMNQLQGSLHVVGLSYNVAGSYEVEQADFANKTELTSLHLQFREVGEDSTDNKDEELLEAVRPSTNLKQLYIKRYMGSVYPSWMVSLSNLTHLEF KVCKEVKYLPHLGGLPSLEKLSFTRLNKVKKVGVELLLGHEQQQYEEDIGAFPKLTVLAFEFMDGWEEWDDRMLSSPSVMPRLSSLTLIDCQELKKLPDA ILQKPTLKRLQVTSCNSEPPEIVLSKVWDNISHIPTIIIDDFNVRTGNTIYPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10004126 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	1.0	0.9976
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10034301 [exp]	2.8	0.9114
AT5G64380			Inositol monophosphatase famil...		Lus10020433 [exp]	2.8	0.9346
AT2G01870			unknown protein		Lus10030135 [exp]	4.9	0.9238
AT2G12400			unknown protein		Lus10008813 [exp]	6.9	0.9166
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	8.1	0.9067
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10029559 [exp]	9.6	0.9307
AT3G05410			Photosystem II reaction center...		Lus10004498 [exp]	12.2	0.9223
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	12.4	0.9108
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	12.4	0.8937

Compare expression of checked genes

Lus10004126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.