Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20340 207 / 3e-69 PETE2, DRT112 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) AT1G76100 190 / 1e-62 PETE1 plastocyanin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034554 [exp] 229 / 4e-78 AT1G20340 218 / 1e-73 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) Lus10005628 [exp] 208 / 3e-70 AT1G76100 190 / 4e-63 plastocyanin 1 (.1) Lus10021839 [exp] 193 / 1e-64 AT1G20340 170 / 2e-55 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246100 [exp] 212 / 3e-71 AT1G20340 192 / 3e-63 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) Potri.002G016000 [exp] 208 / 1e-69 AT1G20340 185 / 1e-60 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00127 [flax] [poplar] Copper-bind Copper binding proteins, plastocyanin/azurin family
Representative CDS sequence Show only first row Show all	>Lus10004155 pacid=23153319 polypeptide=Lus10004155 locus=Lus10004155.g ID=Lus10004155.BGIv1.0 annot-version=v1.0 ATGGCGACACTCACCTCAGCAGCAGTGTCCATCTCATCTTTCACCGCCCTCAAGGCCTCCCCCAAATCATCCGTCACGGTTTCCGCCTCCCCGAAATTCT GCGTCAGGGCCTCGATGAAGGACGTCGGTGTCGCCATGGTCGCCACCGCCGCAACTGCGATCCTCGCAAGCAACGCCATGGCAGTTGAAGTCCTGCTCGG TGGCGACGACGGCTCATTGGCATTCGTTCCCAACAAGTTCTCCATCGCCGCTGGGGAGACCATCACTTTCAAGAACAACGCCGGATTCCCGCACAACATC GTGTTCGATGAGGACGAGGTTCCCGGCGGCGTGGATGTGTCCAAGATCTCCATGTCCGAAGAAGACCTGTTGAACGCTCCTGGGGAGACTTACAAAGTTG CTTTGACTGAGAAAGGAGAGTACTCTTTCTACTGCTCTCCTCACCAGGGAGCTGGCATGGTCGGCAAAGTCACTGTTAACTGA
AA sequence Show only first row Show all	>Lus10004155 pacid=23153319 polypeptide=Lus10004155 locus=Lus10004155.g ID=Lus10004155.BGIv1.0 annot-version=v1.0 MATLTSAAVSISSFTALKASPKSSVTVSASPKFCVRASMKDVGVAMVATAATAILASNAMAVEVLLGGDDGSLAFVPNKFSIAAGETITFKNNAGFPHNI VFDEDEVPGGVDVSKISMSEEDLLNAPGETYKVALTEKGEYSFYCSPHQGAGMVGKVTVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10004155 [exp]	0	1
AT1G03600		PSB27	photosystem II family protein ...		Lus10037438 [exp]	1.0	0.9801
AT1G76100		PETE1	plastocyanin 1 (.1)		Lus10005628 [exp]	3.2	0.9499
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	4.0	0.9401
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	4.2	0.9345
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	6.0	0.9408
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	6.6	0.9184
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	7.1	0.9347
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10041502 [exp]	9.8	0.9144
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031168 [exp]	11.2	0.9223
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	11.5	0.9297

Compare expression of checked genes

Lus10004155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.