Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27720 182 / 3e-57 LSM4, EMB1644 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) AT3G11530 145 / 3e-43 Vacuolar protein sorting 55 (VPS55) family protein (.1), Vacuolar protein sorting 55 (VPS55) family protein (.2) AT1G32410 99 / 2e-25 Vacuolar protein sorting 55 (VPS55) family protein AT1G20580 61 / 2e-11 Small nuclear ribonucleoprotein family protein (.1) AT1G76300 59 / 1e-10 SMD3 snRNP core protein SMD3 (.1) AT5G06290 51 / 5e-07 2CPB, 2-CysPrxB ,2-Cys Prx B 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) AT3G11630 49 / 2e-06 Thioredoxin superfamily protein (.1) AT4G02840 43 / 3e-05 Small nuclear ribonucleoprotein family protein (.1.2) AT3G07590 41 / 0.0001 Small nuclear ribonucleoprotein family protein (.1.2) AT3G59810 40 / 0.0002 Small nuclear ribonucleoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029426 [exp] 370 / 4e-125 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10021295 [exp] 101 / 9e-25 AT5G06290 404 / 6e-144 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10016969 [exp] 100 / 5e-24 AT5G06290 403 / 2e-143 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Lus10006605 [exp] 96 / 3e-23 AT1G32410 202 / 4e-67 Vacuolar protein sorting 55 (VPS55) family protein Lus10016013 [exp] 61 / 4e-11 AT1G20580 219 / 3e-75 Small nuclear ribonucleoprotein family protein (.1) Lus10012263 [exp] 61 / 4e-11 AT1G20580 219 / 3e-75 Small nuclear ribonucleoprotein family protein (.1) Lus10030747 [exp] 61 / 4e-11 AT1G20580 214 / 2e-73 Small nuclear ribonucleoprotein family protein (.1) Lus10013227 [exp] 61 / 4e-11 AT1G20580 214 / 2e-73 Small nuclear ribonucleoprotein family protein (.1) Lus10028022 [exp] 44 / 2e-05 AT3G07590 181 / 1e-60 Small nuclear ribonucleoprotein family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205700 [exp] 181 / 2e-56 AT5G27720 179 / 5e-59 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Potri.014G130700 [exp] 178 / 2e-55 AT5G27720 176 / 7e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Potri.006G209100 [exp] 144 / 5e-43 AT3G11530 210 / 3e-72 Vacuolar protein sorting 55 (VPS55) family protein (.1), Vacuolar protein sorting 55 (VPS55) family protein (.2) Potri.001G146600 [exp] 106 / 7e-28 AT1G32410 176 / 6e-58 Vacuolar protein sorting 55 (VPS55) family protein Potri.003G087500 [exp] 103 / 1e-26 AT1G32410 180 / 1e-59 Vacuolar protein sorting 55 (VPS55) family protein Potri.006G204900 [exp] 87 / 1e-19 AT5G06290 385 / 2e-136 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.016G072100 [exp] 76 / 1e-15 AT5G06290 390 / 3e-138 2-CYS PEROXIREDOXIN B, 2-cysteine peroxiredoxin B (.1) Potri.002G010200 [exp] 62 / 1e-11 AT1G20580 214 / 5e-73 Small nuclear ribonucleoprotein family protein (.1) Potri.005G251100 [exp] 61 / 2e-11 AT1G20580 211 / 6e-72 Small nuclear ribonucleoprotein family protein (.1) Potri.002G054800 [exp] 43 / 3e-05 AT3G07590 183 / 1e-61 Small nuclear ribonucleoprotein family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain CL0527 [flax] [poplar] PF04133 [flax] [poplar] Vps55 Vacuolar protein sorting 55
Representative CDS sequence Show only first row Show all	>Lus10004221 pacid=23175399 polypeptide=Lus10004221 locus=Lus10004221.g ID=Lus10004221.BGIv1.0 annot-version=v1.0 ATGGCGTGCTCAGCAGCTACATCCGCCTCTCTCACCTTCTCCATCCCCACCACCAAAATCCATGCCTGCCACTTCACCCCTCTCCAAACCCAACCTCCTC TCCCCAATTCCTTGTTCGGCCTCCGCAAGCCCCTCTCCCAATCCACATTCAACGCTCGCTCTATCAATGCTAGAAACAGGATGAAGAGCTTCGTCGTCAG AGCCAGTAGTGAGCTTCCGTTGGTTGGAAACGTAGCTCCTGATTTCGAAGATGAAGCTGTTTTCGACCAGGAGTTCATCAAGGCTTGTGCAATATACAAC AACTGGTGGCCGATGTTATCAGCTCTTATGTACGTGGTAGTGCCTATGCCCTGTTTATTCTTCGGAGGAGGGTCCACTCAATTCTTCACTAGTCGAGATG GTGGCGGTTGGATAGATGCTGCTAAGTTCATGACTGGAGCATCGGCAGTAGGGAGCCTGGCCATTCCTATCATCCTCAGGCACGCTAACATGATTGAAAC AGGAGCCATGTTCATCGAGTTCACGTCTTTCTTCATATTCCTTCCTCTTTCTCTGTTGAAGACTGCACAGGGTCATCCAATGTTGGTTGAGCTTAAGAAT GGTGAAACTTACAATGGGCATCTGGTCAATTGTGATACTTGGATGAACATTCATCTCCGAGAAGTTATCTGCACCTCAAAGGATGGAGACCGGTTTTGGC GTATGCCTGAATGCTACATTCGTGGGAATACCATCAAGTATCTCAGAGTCCCTGACGAGGTGATTGATAAAGTTCAGGAAGACAAAAGTCGCTCAGGCTA CCCTAGTTTATTGTTGGCTTTGCTAATGACTGGTCGCTTTTACGCAGATCGAAAGCCACCTGGCGTTGGACGTGGCAGAGGAAGGGGCAGAGAAGATGGT CCAGCAGGCGGTAGGGGACCAAACCGCGGCGGAAGCTTTGATGATGGAGCTAATAAGGGTCCGGGTGGAGGCCGTGGAAGAGGTGGTCCTTCTGGTGGGA AGAACAGAGGTGCAGGTAGAGGCCGTGGCTGA
AA sequence Show only first row Show all	>Lus10004221 pacid=23175399 polypeptide=Lus10004221 locus=Lus10004221.g ID=Lus10004221.BGIv1.0 annot-version=v1.0 MACSAATSASLTFSIPTTKIHACHFTPLQTQPPLPNSLFGLRKPLSQSTFNARSINARNRMKSFVVRASSELPLVGNVAPDFEDEAVFDQEFIKACAIYN NWWPMLSALMYVVVPMPCLFFGGGSTQFFTSRDGGGWIDAAKFMTGASAVGSLAIPIILRHANMIETGAMFIEFTSFFIFLPLSLLKTAQGHPMLVELKN GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEDKSRSGYPSLLLALLMTGRFYADRKPPGVGRGRGRGREDG PAGGRGPNRGGSFDDGANKGPGGGRGRGGPSGGKNRGAGRGRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10004221 [exp]	0	1
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Lus10029426 [exp]	1.4	0.9283
AT5G57860			Ubiquitin-like superfamily pro...		Lus10035816 [exp]	2.0	0.8874
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10002109 [exp]	3.2	0.8975
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10020302 [exp]	5.5	0.8448
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10016132 [exp]	5.5	0.8797
AT2G37480			unknown protein		Lus10023755 [exp]	7.7	0.8929
AT3G16640		TCTP	translationally controlled tum...		Lus10002877 [exp]	8.7	0.8819
AT2G04900			unknown protein		Lus10001166 [exp]	8.8	0.8600
AT3G16640		TCTP	translationally controlled tum...		Lus10033959 [exp]	8.9	0.8535
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10014029 [exp]	9.4	0.8600

Compare expression of checked genes

Lus10004221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.