Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62890 928 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT5G49990 852 / 0 Xanthine/uracil permease family protein (.1) AT1G60030 830 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT1G10540 753 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 625 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 610 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 595 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 573 / 0 Xanthine/uracil permease family protein (.1) AT2G26510 491 / 7e-170 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT5G25420 406 / 3e-138 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042138 [exp] 974 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10034125 [exp] 956 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10043460 [exp] 905 / 0 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 867 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 865 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10033773 [exp] 615 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 597 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10036355 [exp] 594 / 0 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10014777 [exp] 588 / 0 AT1G65550 751 / 0.0 Xanthine/uracil permease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G077400 [exp] 949 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 948 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 862 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 857 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 679 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 600 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 597 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 590 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G015100 [exp] 576 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 523 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10004228 pacid=23177819 polypeptide=Lus10004228 locus=Lus10004228.g ID=Lus10004228.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGCGGCGGCGGAGGTAAGGCTGAAGAGGCACAGCCACACCCACCAAAAGAGCAGCTCCCCAACATTTCATACTGCATTACCAGTCCTCCTC CATGGCCCGAGGCGATCCTTCTAGGGTTTCAGCACTACCTTGTGATGCTTGGGACTACTGTTCTCATCCCCACTGCTCTAGTCCCACAAATGGGTGGTGG AAATAAGGAGAAGGCTCAGGTGATTCAGACACTGCTCTTTGTTTCTGGTTTGAACACATTGCTTCAGAGTTTGTTTGGCACTCGATTGCCTGCTGTTATT GGAGGCTCTTACACCTTTGTCCCAACAACAATCTCGATTATCCTTGCTGGTCGATTCAGTGACAGTATAGATCCTATTGAGAAATTTAAGAAGACAATGC GTGCAATCCAAGGTGCAATGATTATCGCTTCAACTCTTCAGATTGTACTGGGATTCAGTGGCCTTTGGCGTAATGTGACAAGGTTCTTGAGCCCGCTTTC TGCTGTCCCTTTGGTTGGTCTCGTTGGGTTCGGCTTGTACGAGCTTGGATTTCCTGGAGTTGCCAAATGTATTGAGATTGGACTACCAGAGCTTGTCATA CTGTTGTTTGTTTCACAGTATATGCCCCATGTGCTCAAATCAGGGAAACATGTCTTTGATCGGTTTGCTGTCATATTTGCAATCATAATTGTCTGGATAT ATGCACACCTACTCACTGTTGGTGGGGCTTATAATGGCGCAGCGCCAAAGACTCAATTTAGCTGCCGCACTGATCGTGCAGGATTGATCGGTGGTGCTCC ATGGATAAGAGTTCCATATCCATTCCAGTGGGGAGCACCTTCTTTTGATGCCGGTGAAGCTTTTGCTATGATGATGGCTTCTTTTGTTGCGCTTGTAGAG TCTACGGGTGCCTTCATTGCGGTATCGAGGTATGCAAGTGCAACTCACATGCCACCTTCTGTTCTTAGTCGCGGTGTTGGCTGGCAGGGAGTGGCCATTT TGCTTTCTGGATTATTTGGAACTGTGAATGGTTCATCTGTCTCTGTTGAGAATGCTGGCCTTTTGGCCCTTACAAGAGTTGGCAGCAGAAGGGTTGTCCA GATATCTGCTGGATTCATGATTTTCTTCTCCATCCTTGGAAAATTCGGGGCAGTCTTTGCTTCAATTCCAGCTCCTATCATTGCAGCTCTATACTGCCTC TTCTTTGCTTATGTCGGTGCGGGAGGTCTTAGCTTCCTTCAGTTCTGCAATCTCAACAGCTTCAGAACAAAGTTCATACTAGGCTTCTCCATCTTCATAG GCTTGTCAATACCACAATACTTCAACGAGTACACTGCGATTAACGGCTATGGTCCAGTTCACACCGGAGCAAGATGGTTCAACGACATGGTAAATGTTCC ATTCTCATCCGAAGCATTTGTCGCGGGTTGTGTGGCATACTTCCTAGACAACACATTGCACAAGAAAGACAGTGCTATCAGGAAAGACAGGGGAAAACAC TGGTGGGCAAAGTTCAAGTCATTCAAGGGTGACACAAGGAGTGAAGAGTTCTACTCTTTGCCTTTCAACCTAAACAAATACTTCCCATCTGTCTGA
AA sequence Show only first row Show all	>Lus10004228 pacid=23177819 polypeptide=Lus10004228 locus=Lus10004228.g ID=Lus10004228.BGIv1.0 annot-version=v1.0 MAGGGGGGKAEEAQPHPPKEQLPNISYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTALVPQMGGGNKEKAQVIQTLLFVSGLNTLLQSLFGTRLPAVI GGSYTFVPTTISIILAGRFSDSIDPIEKFKKTMRAIQGAMIIASTLQIVLGFSGLWRNVTRFLSPLSAVPLVGLVGFGLYELGFPGVAKCIEIGLPELVI LLFVSQYMPHVLKSGKHVFDRFAVIFAIIIVWIYAHLLTVGGAYNGAAPKTQFSCRTDRAGLIGGAPWIRVPYPFQWGAPSFDAGEAFAMMMASFVALVE STGAFIAVSRYASATHMPPSVLSRGVGWQGVAILLSGLFGTVNGSSVSVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIIAALYCL FFAYVGAGGLSFLQFCNLNSFRTKFILGFSIFIGLSIPQYFNEYTAINGYGPVHTGARWFNDMVNVPFSSEAFVAGCVAYFLDNTLHKKDSAIRKDRGKH WWAKFKSFKGDTRSEEFYSLPFNLNKYFPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	0	1
AT5G62890			Xanthine/uracil permease famil...		Lus10042138 [exp]	1.0	0.9078
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	2.8	0.8632
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	4.2	0.8114
AT4G29330		DER1	DERLIN-1 (.1)		Lus10034990 [exp]	4.5	0.8056
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	5.5	0.8444
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	5.7	0.8148
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10041083 [exp]	8.0	0.8213
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	8.1	0.8155
AT3G26700			Protein kinase superfamily pro...		Lus10012585 [exp]	9.9	0.7368
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	10.2	0.8153

Compare expression of checked genes

Lus10004228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.