Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19000 115 / 1e-29 MYB Homeodomain-like superfamily protein (.1.2) AT1G74840 113 / 2e-29 MYB Homeodomain-like superfamily protein (.1.2) AT1G70000 106 / 2e-26 MYB myb-like transcription factor family protein (.1.2) AT3G16350 104 / 6e-25 MYB Homeodomain-like superfamily protein (.1) AT5G58900 101 / 1e-24 MYB Homeodomain-like transcriptional regulator (.1) AT5G47390 102 / 2e-24 MYB myb-like transcription factor family protein (.1) AT1G49010 97 / 9e-23 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 95 / 9e-23 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G08520 96 / 2e-22 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G56840 93 / 7e-22 MYB myb-like transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036652 [exp] 121 / 9e-32 AT1G74840 176 / 4e-54 Homeodomain-like superfamily protein (.1.2) Lus10013289 [exp] 115 / 2e-29 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10010733 [exp] 113 / 5e-29 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 112 / 3e-28 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 106 / 9e-27 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10037560 [exp] 105 / 2e-25 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10006826 [exp] 104 / 3e-25 AT3G16350 235 / 1e-74 Homeodomain-like superfamily protein (.1) Lus10038279 [exp] 102 / 6e-24 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10025822 [exp] 102 / 6e-24 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191800 [exp] 125 / 5e-33 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.010G039233 [exp] 124 / 8e-33 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.015G069000 [exp] 112 / 4e-28 AT1G70000 132 / 8e-37 myb-like transcription factor family protein (.1.2) Potri.012G073900 [exp] 108 / 4e-27 AT1G74840 152 / 2e-44 Homeodomain-like superfamily protein (.1.2) Potri.006G230500 [exp] 101 / 6e-25 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.003G049100 [exp] 103 / 1e-24 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.003G079500 [exp] 100 / 6e-24 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.001G189800 [exp] 101 / 7e-24 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.001G155300 [exp] 99 / 2e-23 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.006G150300 [exp] 98 / 4e-23 AT5G56840 160 / 5e-48 myb-like transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004248 pacid=23177814 polypeptide=Lus10004248 locus=Lus10004248.g ID=Lus10004248.BGIv1.0 annot-version=v1.0 ATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAAAAGGGGGTTGGTCTCCTTACCCGCCACCGC CGCCGGTTATGCTTCCGCCGATGATGCTGTTCATCACTCATCTGGCACTCGCTCCGAACGTAAGCGAGGTATTCCTTCACCCTATATCTTTCTCTGTGTA CTGATTTTGGAGTATAGAATCGGTGGATTGGTTCGTCGGATAGCGGTTTCACAGAGTGTGATTGATTTGTTGTTGCTCACGGAATTTGATTTTTTTTCAA TCGGGAGAGTAGGGATACCGTGGACGGAAGATGAGCACAAGCTGTTCCTTATTGGATTGCAGAAGGTAGGAAAGGGGGATTGGAGAGGAATCTCTCGCAA TTTCGTCAAGACTCGAACTCCGACTCAGGTCGCCAGTCACGCTCAGAAGTACTTCCTCCGGCGACTCAATATCAATCGCCGCCGCCGTAGATCCAGCCTC TTTGATATCACTACTGATACGGTCACTATGGAACAAGAGGAATCCCATTCCTACAACCAAGAGAACAAGAAGAAGAAGAAGATGCCCTCGCCATCTCCGC CTGCTGAACCAACCAACATTATGAGCTGCTTCCCTGTCATGCCAGCTTTCACCCTATCCGCCAATCCATCCTCCATCGGGACTGACATGCCTATCGATAA CCTGACATTAATAGAAGGCATTCAATCCTCTGCAAATCTCGCCCATCCTGTTCTTCATGTCGCCCCATCATCGTCCTTATCTCGTACCTCATCAAGGACG ATATCGGATGTCGACTTGAATCTGAACTCGGAATCACCCGATGCAGGAATGTCGTTGGTGCTGAATCTGTCATTGCCATCTGATCAAAGGACGAGGCAGC ACAACACAGCCTCCTTGAAGATGATGCACAGGGGCTATGGCAATGGGGATAATAGCACTATCAGCGTAGCTTGA
AA sequence Show only first row Show all	>Lus10004248 pacid=23177814 polypeptide=Lus10004248 locus=Lus10004248.g ID=Lus10004248.BGIv1.0 annot-version=v1.0 MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRGLVSLPATAAGYASADDAVHHSSGTRSERKRGIPSPYIFLCV LILEYRIGGLVRRIAVSQSVIDLLLLTEFDFFSIGRVGIPWTEDEHKLFLIGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRLNINRRRRRSSL FDITTDTVTMEQEESHSYNQENKKKKKMPSPSPPAEPTNIMSCFPVMPAFTLSANPSSIGTDMPIDNLTLIEGIQSSANLAHPVLHVAPSSSLSRTSSRT ISDVDLNLNSESPDAGMSLVLNLSLPSDQRTRQHNTASLKMMHRGYGNGDNSTISVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47390	MYB		myb-like transcription factor ...		Lus10004248 [exp]	0	1
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10002994 [exp]	1.0	0.9428
AT3G48860			unknown protein		Lus10036015 [exp]	7.2	0.9158
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	7.3	0.9230
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10036196 [exp]	7.3	0.8949
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	9.3	0.9215
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Lus10030694 [exp]	9.7	0.8457
AT2G45670			calcineurin B subunit-related ...		Lus10036544 [exp]	12.5	0.8659
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	13.4	0.8775
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	15.0	0.9048
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10042847 [exp]	18.2	0.8691

Compare expression of checked genes

Lus10004248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.