Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 434 / 2e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 365 / 2e-105 transmembrane receptors;ATP binding (.1.2) AT1G27180 365 / 9e-105 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 333 / 1e-94 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G11250 314 / 1e-88 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G51630 312 / 6e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT2G14080 308 / 1e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 305 / 2e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 309 / 3e-86 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G56540 303 / 9e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042165 [exp] 1828 / 0 AT5G36930 326 / 9e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 1112 / 0 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001366 [exp] 1110 / 0 AT5G36930 424 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10001375 [exp] 936 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 842 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029628 [exp] 838 / 0 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018658 [exp] 832 / 0 AT1G27180 360 / 4e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10035674 [exp] 811 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026011 [exp] 803 / 0 AT1G27170 423 / 5e-127 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206400 [exp] 459 / 3e-143 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 458 / 1e-142 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 462 / 1e-141 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 439 / 1e-135 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 442 / 7e-135 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 441 / 1e-134 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 441 / 3e-134 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 439 / 7e-134 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 436 / 2e-133 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 437 / 2e-132 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10004257 pacid=23177810 polypeptide=Lus10004257 locus=Lus10004257.g ID=Lus10004257.BGIv1.0 annot-version=v1.0 ATGGAGATTTGGTTGCTTTGGTGCTCCACTTGTCTAGCCATGCTTCTTCCCTTGATCATCTTCTTCTTCTCCAAATTCCTGCTTCGAAGATGGAACGCCC ACCGGCTACCCACTTCAGAGGTCCTCGATTCTTCTTCTTCTCCTTCGCTTTCTCCATCAGATTCGTCTTCTTCTTCGCTGCCTCTCCCTACGGGAGAATA CGAGGTTTTCCTGAGCTTCAGAGGTCCAGACACTCGCAACAACATAGCGGATTTCCTCTACATGTACTTGGCGCGTTCTAGGGTTCGCACTTTCAGAGAC GACGAGGAGCTCCGCAAGGGCGAACAGATCGCCCCCGGACTCATCCAAGCTATCTTCCAGTCCAAGATTTACATACCGATCCTCTCCCAAACTTACGCTT CCAGCAAATGGTGCCTTAAGGAGCTCGCACAAATGGTGGAGTGCCGTAAGCAGGATCCAGGGCATGTCTTCTTCCCTATCTTCTACCTCGTTGATCCCAG GGACGTTCGTCATCAAACCGGAACCTATGAGGGTGCCTTTCGCCTGCACCGGAGAAATTATGATGCTAAAACTGTACAGCAGTGGGAAGAAGCTCTCAAA GAGGTTGGATCCATGAAAGGATGGCACGTTACTGACTTGAATGGGCAAGGAAGTGTAGTAGATGATGTGTTCGAACATGTGCTGTCACTTTTGAACAAGA ATTACTCGTTGGTGACTGATGAGTTGGTTGGGATCGATCGCCATGTGCGAAAAGTGGTGAAATTGCTCGATGAAGATTCCGGAGGTGTAAAAGTTGTTGG TATTCACGGGATGGGTGGCATTGGCAAGACAACTATTGCCACTGCTGTGTACAACGAAATCAGTTCACGCTTCAACCGCTGCAGCTTTCTACAAGATGTG CATGAAACGTTACAGCAACACGAGGGTATTGTCGCTTTACAGAATAAGCTAATCTCCAGCATTACAAGAAACGCCACTCCTGTTCGTGATGCTAGCGAAG GACTTCGGGTGATACAGGATAGAGTTTGTCAACACAGAGTCTTTATAGTTCTCGATGATGTCGGTGATAAGTTTGATTATGAGAAGATCTTGGGGCGGTA CGAGAAATTTTTCCCGGGAAGTAGGTTTGTCATCACAACTAGGAATAAGAAGGTGTTTACCTCTATTAAGGGTTCTGAGTTGTATGAACCTGAGGAAATG AATGATGATGATTCACTTCAACTCTTCAGCAAGCATGCATTCAGAACGGATTCTCCTCCCAAGGAATATGTAACTTTATCTGGACAAGCGGTCTTACTTG CTGCAGGGCTTCCTTTGACTCTTAAAGTTGTGGGATCGCTTTTATTCGGTGAAGATAAAGAGGTTTGGGATGAGAAGTTGATGCAGTTGAAAGAGGTTCC TCCCACAGAGGTCTTGGGAAAGTTGAAAATAAGCTATAACGCATTGACATACGCGGAGCAGCAAATATTTCTCGATATTGCTTGCTTCTTCATTGGAGAG ACTAGAGAAGTGGCTTCTTTTATGTGGAGTGATTGTAAATTTTATCCTGTCAGTGCGATCAGTGCCCTTATTCTTAGGTCTTTGATCAAAATTGGGCCAA ATAATGAGTTCAAGATGCACGAACAACTTAGAGATCTCGGCAGAGAAATTGTACGTGAGGAGAATGTTGAGCATTTATGGAAGCGCAGTAGGATATGGTC TAATGAGGATGCCGTGGACATGCTAGACCGCAAAAAGGGAACAGAGCAGGTGAAAGCCGTTAAAGTCGACTTATATATGAAATTTCCTCTTACAAATCAA CACTTCGAGAAATTGCTGGAGTTGAGATACCTTGAAGCACACCATGCAGAAATTGATGGGGACTTTGACGAACTTCTTTCAGATTTGAGATGGATAAAAT TGATACGTCTTCGAGGGAATTCAGCACCAACTAATTTGTACCTAAAGAAGTTGGTGATACTTGACGTTCGTGACAACCTCATAGTAGATAACTGGCAAGG CTGGAACCAGCTCAAGGTTTGTTGCAATCTGAAAAAGCTAAAGCTTAGCTATTCCGGAATAACAAGGCTATCCAGTGGAATCGGGCTGCTTCAGAAGCTC GAGGAGCTGGATGCATGGGAATGTACGAATTTGGAAGAACTCCCCGGAGATATCGGAGACCTGCAATCTCTCAAAATCTTAAAAGTCACATCTCGGAAGG ATTTCCAGGTGCCAGATCTTCCTTCAGGAATAAAGGAGCTTGCTGTTTCATCTCTGGTTCCCAATCTTTCTGATCTGAAGGACTTGGAAGAATTGGCCAT TAACACTTGCCAAAGTGTTGATAGTCCTCAGGATATATGGACGCTATCGAATTTAAAATCTTTCAATCTGTGCCAGTCGGACACGAAAAGTCTGCAGGTC CTTCCATCATCTCTACAGAAGCTTTTTCTTCGGCAATGTCCATTGTTGGAGGCATTGCCTGATCTTGCCAACCTGAAGAGCTTGATAGAGTTAACACTAT TTTGCTGTCCCAAGGTTCCCGAGATTCGAGGCCTTGGAGAGCTCAAATCATTGACAACCTTGGAAATAACAGATGGAGCAAGTATAATCAATCTGCACGG CCTCGGAAATCTCACGTCCTTGACGTTCTTGGATGTGGAGAAGTGTCATCTGTTGGAAAATTTACCCAATCTAGCCGATTTAAAGAAGGTACGAACGCTG AAAATCCGTCGTTGTTCTCGTATTTCGGGAATTCAAGGCCTTGGTGAAATGGAGTCTTTAGAACATGTGGAGATCTATGATTGTGGACTTCTTCAAACGT TGCCTGATCTTTCAAAGTTATCCAAGCTAAAAGATCTAACGATCTGCAAATGCCGGAGATTGACTGGTATAGAAGGCATTGGATCTATGGAAGCACTGGA ACACTTGAATCTGAGTGAGTGTCAGTTGATAAAGAGGCTACCTTGTTTGTCAAAGCTGAAGAAATTGAAGAAGCTAATCGCGAAGAAGAACACTCATTTG TTCGAGATCGAGAGTCTTGATAACTTGAGCTTATTGGAGATTCTGGAGCTCCCAAATTGCCTGTCGCTGGAAAGGCTACCTAGCCTTTCCAGCCTCAAGA GTCTTAAAACTTTAGACGTTGACTGTTGCATGAGTTTGGTTGAGGTTACCGGCTTCGATGGACTCGAGTCACTGGAATCTTTGAGTATGAATGCTTGCTG GTCGATTGAGAAGATTCCAAGCGTTTCGAATATGAAATGCTTATCTCATCTGGGGCTAAATGGCTGTGAGAAACTAACAGAGCTCCTCGGAGTCGAAGGA CTAGACTCCTTGAAAGTGATGGATCTCCAAGGCTGCAAGTCCATCGAGTCGCTGAACATCAACAATCTTAAACATCTAGAGAAACTATCTCTGAAAGATT GCGAGAACTTAATCGAACTCTCGGGACTCAAAGGACTCAACTCTCTGAAAGTGCTGAATATGGATTCGTGCACGTCACTTGTGAAGTTGGCTAGCCTATC CAATCTCAGGAGATTGGAAAAACTGTTTCTAGATGATTGCGAAAAGCTGACAGTGGTTTCAGGACTCGGAGAAATTGTGATGCTGCAAGTGCTGAGTATT TACGGGTGCACATCGATCGAGAAGTTACCTAACATCTCGAATCTAAGACGCCTGCAATATTTGTCTCTGATTGGCTGTGAGAAACTAAGTGAGCTGGCGG GAGTTGAAAGTTTGGAGTCACTGAAGGAGCTGAAACTTAATTTCTGCAAGTCGATCGAGAGGCTACCGAACCTTTCGAGTCTCGGACATTTGGAGAGGCT CTCTTTAAGAGGTTGCGAAAGGCTTGAATACCTGCAGGGTCTGGAGGAGTTGAAATCCTTGAAGTTCTTGGATGTCTCTGGATGCGGATTGATCAAGGAA TTACCACATCTTCCTCATACAAAAGTCATCAGATAA
AA sequence Show only first row Show all	>Lus10004257 pacid=23177810 polypeptide=Lus10004257 locus=Lus10004257.g ID=Lus10004257.BGIv1.0 annot-version=v1.0 MEIWLLWCSTCLAMLLPLIIFFFSKFLLRRWNAHRLPTSEVLDSSSSPSLSPSDSSSSSLPLPTGEYEVFLSFRGPDTRNNIADFLYMYLARSRVRTFRD DEELRKGEQIAPGLIQAIFQSKIYIPILSQTYASSKWCLKELAQMVECRKQDPGHVFFPIFYLVDPRDVRHQTGTYEGAFRLHRRNYDAKTVQQWEEALK EVGSMKGWHVTDLNGQGSVVDDVFEHVLSLLNKNYSLVTDELVGIDRHVRKVVKLLDEDSGGVKVVGIHGMGGIGKTTIATAVYNEISSRFNRCSFLQDV HETLQQHEGIVALQNKLISSITRNATPVRDASEGLRVIQDRVCQHRVFIVLDDVGDKFDYEKILGRYEKFFPGSRFVITTRNKKVFTSIKGSELYEPEEM NDDDSLQLFSKHAFRTDSPPKEYVTLSGQAVLLAAGLPLTLKVVGSLLFGEDKEVWDEKLMQLKEVPPTEVLGKLKISYNALTYAEQQIFLDIACFFIGE TREVASFMWSDCKFYPVSAISALILRSLIKIGPNNEFKMHEQLRDLGREIVREENVEHLWKRSRIWSNEDAVDMLDRKKGTEQVKAVKVDLYMKFPLTNQ HFEKLLELRYLEAHHAEIDGDFDELLSDLRWIKLIRLRGNSAPTNLYLKKLVILDVRDNLIVDNWQGWNQLKVCCNLKKLKLSYSGITRLSSGIGLLQKL EELDAWECTNLEELPGDIGDLQSLKILKVTSRKDFQVPDLPSGIKELAVSSLVPNLSDLKDLEELAINTCQSVDSPQDIWTLSNLKSFNLCQSDTKSLQV LPSSLQKLFLRQCPLLEALPDLANLKSLIELTLFCCPKVPEIRGLGELKSLTTLEITDGASIINLHGLGNLTSLTFLDVEKCHLLENLPNLADLKKVRTL KIRRCSRISGIQGLGEMESLEHVEIYDCGLLQTLPDLSKLSKLKDLTICKCRRLTGIEGIGSMEALEHLNLSECQLIKRLPCLSKLKKLKKLIAKKNTHL FEIESLDNLSLLEILELPNCLSLERLPSLSSLKSLKTLDVDCCMSLVEVTGFDGLESLESLSMNACWSIEKIPSVSNMKCLSHLGLNGCEKLTELLGVEG LDSLKVMDLQGCKSIESLNINNLKHLEKLSLKDCENLIELSGLKGLNSLKVLNMDSCTSLVKLASLSNLRRLEKLFLDDCEKLTVVSGLGEIVMLQVLSI YGCTSIEKLPNISNLRRLQYLSLIGCEKLSELAGVESLESLKELKLNFCKSIERLPNLSSLGHLERLSLRGCERLEYLQGLEELKSLKFLDVSGCGLIKE LPHLPHTKVIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10004257 [exp]	0	1
AT1G58230			binding (.1)		Lus10028167 [exp]	10.6	0.8979
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10015776 [exp]	13.0	0.8366
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	15.9	0.8641
AT1G48090			calcium-dependent lipid-bindin...		Lus10017107 [exp]	18.0	0.8787
AT2G46560			transducin family protein / WD...		Lus10005975 [exp]	18.5	0.8794
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	19.0	0.8605
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	20.8	0.8501
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10025454 [exp]	21.6	0.8416
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Lus10042137 [exp]	23.5	0.8754
AT1G48090			calcium-dependent lipid-bindin...		Lus10037833 [exp]	25.4	0.8757

Compare expression of checked genes

Lus10004257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.