Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28580 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 505 / 1e-175 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28510 499 / 3e-173 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 481 / 3e-166 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28600 438 / 5e-150 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 434 / 9e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28520 434 / 1e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 433 / 4e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 393 / 8e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 362 / 9e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042166 [exp] 1057 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 547 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 526 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 505 / 5e-176 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 478 / 2e-165 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014497 [exp] 477 / 8e-165 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032188 [exp] 448 / 1e-153 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10030667 [exp] 428 / 7e-146 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10005256 [exp] 425 / 3e-142 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067400 [exp] 633 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 537 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 536 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 535 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 534 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020700 [exp] 526 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 512 / 4e-179 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 512 / 4e-179 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 507 / 5e-177 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.012G072300 [exp] 363 / 2e-123 AT3G28610 306 / 6e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10004258 pacid=23177809 polypeptide=Lus10004258 locus=Lus10004258.g ID=Lus10004258.BGIv1.0 annot-version=v1.0 ATGGCGGGAATGCCACGGTTATTGACGGAGATGTGGTCGACGTCGACGGTGGGTTCAACAATAGCCACCTTCCTATTCCTCTCCGCAATGTTCCGACAAT ACTTCCCCTACGAGCTCCGCCGTTACTTGGAAAGCCAATTCCACCGCCTCTCCCTCCACTACTTCAACCCATACATAAAAATCTCCATCCACGAGTTCAC CGGCGACGGCCTCAAGCGCAGCGAGGCCTACTCCGCCGTCGAGGCCTACCTCTCGGCCAACTCCTCCCGCACCGCCGCCCGCCTCAAGGCCGAGATGTCT TCCAGGGACAGCTCCTCTCTGGTCCTCACCCTCGACGACCACGAGCGAGTCTCCGACGACTTCCACGGCGTCAGAGTGTGGTGGCACGCCGCCAAGCTCG TCTCCTCCCAGCAGCCTCACTCCCCTTTCTTCGCTGCCGAACGCCGCTACTACGGTCTCTCCTTCAACAAGGGCCACCGCCAGCTCATCACCGAGGACTA CCTTCGCCACGTGGTCCGGGTCGGGAAGGAGATCCGGGCCCGGAACCGGCAGCGGAAGCTCTACACCAACAGCTCAGCCAACAAGTGGCTGAGCTTCAAC AAGACTAGTTGGAGCCACATCCCGTTCGAGCATCCGGCCACGTTCGATACCATGGGCATGGATCCCAACTTGAAGAAGGAGATCATCGACGATCTCATCA CTTTCACCGAGAGCAAGGATTTCTACTCCAGGATCGGTAAAGCCTGGAAACGCGGCTACCTGCTGTACGGACCTCCCGGAACGGGGAAATCCACGATGAT CGCCGCAATGGCGAATCTGCTGAACTACGATGTCTACGATCTGGAGCTGACGGCGGTGAAGGACAACACCGAGTTGAGGAAGCTTCTGACCGACACGACG AGTAAAGCGATTATCGTGATCGAGGACATTGATTGCTCGCTGGATCTGACAGGGCAGAGGAAGACGATGAAGCAGAGTAGTACTAAGTTCGGGTTTGATG ACATAGAGAGCTTGATTGAGAAGGAGATAATGAATCAGAAGGCCAAAATGGGGAAAGATCATGAGATTCAAGATATCAACAGTAGTAGTAGCAGGGTTAC GCTCTCTGGACTTTTGAATTTCATCGATGGATTGTGGTCGTCGAGTGGAGGGGAGAGGCTGATTGTGTTCACTACCAACCATGTGGAGAAGCTGGATCCT GCTCTGATAAGAAGGGGAAGGATGGACAAGCATATCGAGCTTTCTTACTGCAGATTCGAGGCGTTTCGAGTTCTGGCTAGGAATTACCTGAGATTGGAAG ATCATCCGATGTTTAAGGAGGTGGCGAGGCTGATTAAGGAGATCAAGATCACTCCTGCTGATGTTGCTGAGAATCTTATGATCAGGTCGCCTTCAGACGA TGCTGGTAGGTGCCTCGCCAGGTTGATTGCGGCCATGGAGGAAGTTAAGGACACTGCTGATGCTGTGAAGCCGGAGGTTGAAGCTCCGGATAATGGGTCG GAGACGAAAACGGGGAGTTCGCCGGATGTTGGGGTCGTCTGTCAGATGATCAAGACTGACTTTTGCTGA
AA sequence Show only first row Show all	>Lus10004258 pacid=23177809 polypeptide=Lus10004258 locus=Lus10004258.g ID=Lus10004258.BGIv1.0 annot-version=v1.0 MAGMPRLLTEMWSTSTVGSTIATFLFLSAMFRQYFPYELRRYLESQFHRLSLHYFNPYIKISIHEFTGDGLKRSEAYSAVEAYLSANSSRTAARLKAEMS SRDSSSLVLTLDDHERVSDDFHGVRVWWHAAKLVSSQQPHSPFFAAERRYYGLSFNKGHRQLITEDYLRHVVRVGKEIRARNRQRKLYTNSSANKWLSFN KTSWSHIPFEHPATFDTMGMDPNLKKEIIDDLITFTESKDFYSRIGKAWKRGYLLYGPPGTGKSTMIAAMANLLNYDVYDLELTAVKDNTELRKLLTDTT SKAIIVIEDIDCSLDLTGQRKTMKQSSTKFGFDDIESLIEKEIMNQKAKMGKDHEIQDINSSSSRVTLSGLLNFIDGLWSSSGGERLIVFTTNHVEKLDP ALIRRGRMDKHIELSYCRFEAFRVLARNYLRLEDHPMFKEVARLIKEIKITPADVAENLMIRSPSDDAGRCLARLIAAMEEVKDTADAVKPEVEAPDNGS ETKTGSSPDVGVVCQMIKTDFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28580			P-loop containing nucleoside t...		Lus10004258 [exp]	0	1
AT1G70260			nodulin MtN21 /EamA-like trans...		Lus10010696 [exp]	4.4	0.7515
AT4G09810			Nucleotide-sugar transporter f...		Lus10006810 [exp]	6.8	0.7301
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10027270 [exp]	8.1	0.6784
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	15.5	0.7038
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	16.3	0.6837
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	16.6	0.7014
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015283 [exp]	22.3	0.6823
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10002927 [exp]	25.8	0.7105
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10042166 [exp]	27.9	0.7052
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10033382 [exp]	28.5	0.6582

Compare expression of checked genes

Lus10004258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.