Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17630 466 / 1e-163 Nucleotide/sugar transporter family protein (.1) AT1G61800 301 / 8e-100 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G54800 295 / 3e-97 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G46110 232 / 2e-72 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT3G01550 209 / 5e-64 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT5G33320 200 / 3e-60 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT4G03950 162 / 3e-47 Nucleotide/sugar transporter family protein (.1) AT1G77610 88 / 3e-19 EamA-like transporter family protein (.1) AT1G21870 84 / 7e-18 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G12500 70 / 4e-13 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019209 [exp] 696 / 0 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10043060 [exp] 298 / 8e-98 AT5G54800 580 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10011155 [exp] 295 / 6e-97 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10007653 [exp] 285 / 2e-93 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10018356 [exp] 285 / 2e-93 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10013978 [exp] 229 / 2e-71 AT5G46110 641 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10037085 [exp] 227 / 2e-70 AT5G46110 530 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10015399 [exp] 227 / 2e-70 AT5G46110 642 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10013083 [exp] 225 / 8e-70 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G071900 [exp] 473 / 4e-166 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.001G420200 [exp] 297 / 7e-98 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G019900 [exp] 295 / 5e-97 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.011G135900 [exp] 288 / 2e-94 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.008G095200 [exp] 238 / 1e-74 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 232 / 5e-74 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.012G082100 [exp] 231 / 5e-72 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.011G057800 [exp] 230 / 9e-72 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.015G077900 [exp] 216 / 3e-66 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.001G347300 [exp] 211 / 4e-64 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10004312 pacid=23163596 polypeptide=Lus10004312 locus=Lus10004312.g ID=Lus10004312.BGIv1.0 annot-version=v1.0 ATGATGTCACTCAATCTCACTCACTCCCCCGCCGTCCCCTTCTCCGCCGTCAACTCCCGCCGTCCCTCCACCTCCGTCTCTCCTCCACAGTCCTCATTTC CCCCTCACAGAACCACCCGCCTCCTCCTCACCAACTTCACCAACCTCCCCAACAATGGCGGTCCATCCAGATCCACCCTCAGATCTCACCTCCTCATCCC CAAGTCCGCCTCCGCAGGAGGCGAATCAGTACCAGAAACCTCACCGGATCCCGATTCCGAATCCCTGAAGAGGAAGCAAACCCTGAAGCTCGCAACAGCA TTTGGCCTCTGGTACTTCCACAACATCATCTTCAACATCTGCAACAAAAAGGCACTCAACGTCTTTCCCTATCCATGGTTCCTCGCCACTTTCCAGCTCT TCGTAGGCTGCCTATGGATGCTAGTCAACTGGTCAGTCAAACGTCAATTCCCTCAAATTCCTAAAGGCTTCTTCGCCGCTTTATTATTCCCCGCCTTATT CCACACAGTAGGGCACATTTCCGCCTGCGTTTCGTTTTCCAAAGTCGCCGTTTCGTTCACTCACGTCATCAAATCGGCCGAGCCAGTCTTTTCAGTCATC TTCTCATCTTTCCTCGGCGAGATCTATCCTCTGAAAGTGTGGCTGTCGATCCTCCCGATCGTGTTTGGTTGCTCGTTAGCTGCAGTCACTGAAGTCTCGT TCAATTTAGGAGGGCTTTCTGGTGCTATGATCAGTAATTTCGGATTCGTCCTGAGGAACATTTACTCGAAAAAGAGTCTGCAGAATTTTAAAGAAGTCGA TGGATTGAATCTGTACGGGATGATTAGCTTCGTTTCGTTGGTGTATTTGCTTCCTGTTGCGGTGTTTGTTGAAGGGTCGCAGTGGATGCAGGGGTATCAT AATGCGATTGCTGCTGTTGGTTCGAATCCGATCGATTTCTACTCGATGGTTCTCTGTTCTGGGATTTTTTATCATCTTTATAACCAGTCGTCTTACCAGG CGCTTGACGATATAAGTCCGTTGACATTCTCGGTTGGGAACACGATGAAGAGGGTTGTGGTGATTGTTGCTACTGTGTTGTTCTTTAGGAATCCGGTGAA GCCGCTGAATGCTCTTGGATCGGCCATTGCGATCTTCGGGACGTTCTTGTACTCTCAGGTCACTGCTAAGAAGAAGAAGAGCAGCTAA
AA sequence Show only first row Show all	>Lus10004312 pacid=23163596 polypeptide=Lus10004312 locus=Lus10004312.g ID=Lus10004312.BGIv1.0 annot-version=v1.0 MMSLNLTHSPAVPFSAVNSRRPSTSVSPPQSSFPPHRTTRLLLTNFTNLPNNGGPSRSTLRSHLLIPKSASAGGESVPETSPDPDSESLKRKQTLKLATA FGLWYFHNIIFNICNKKALNVFPYPWFLATFQLFVGCLWMLVNWSVKRQFPQIPKGFFAALLFPALFHTVGHISACVSFSKVAVSFTHVIKSAEPVFSVI FSSFLGEIYPLKVWLSILPIVFGCSLAAVTEVSFNLGGLSGAMISNFGFVLRNIYSKKSLQNFKEVDGLNLYGMISFVSLVYLLPVAVFVEGSQWMQGYH NAIAAVGSNPIDFYSMVLCSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVATVLFFRNPVKPLNALGSAIAIFGTFLYSQVTAKKKKSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17630			Nucleotide/sugar transporter f...		Lus10004312 [exp]	0	1
					Lus10025590 [exp]	2.4	0.7821
AT5G57460			unknown protein		Lus10007487 [exp]	4.7	0.8142
AT3G59330			Eukaryotic protein of unknown ...		Lus10002279 [exp]	9.6	0.7724
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	14.5	0.7411
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006819 [exp]	29.4	0.6798
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10003540 [exp]	37.3	0.7275
AT1G72490			unknown protein		Lus10013160 [exp]	43.7	0.6951
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10038312 [exp]	69.6	0.6976
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10027733 [exp]	78.2	0.7365
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10026312 [exp]	92.0	0.7265

Compare expression of checked genes

Lus10004312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.