Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47240 788 / 0 ATNRAMP2, NRAMP2 NRAMP metal ion transporter 2 (.1) AT2G23150 724 / 0 ATNRAMP3, NRAMP3 natural resistance-associated macrophage protein 3 (.1) AT4G18790 705 / 0 ATNRAMP5, NRAMP5 NRAMP metal ion transporter family protein (.1) AT5G67330 699 / 0 ATNRAMP4 ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, natural resistance associated macrophage protein 4 (.1) AT1G15960 321 / 2e-103 ATNRAMP6, NRAMP6 NRAMP metal ion transporter 6 (.1) AT1G80830 318 / 2e-102 ATNRAMP1, PMIT1, NRAMP1 natural resistance-associated macrophage protein 1 (.1) AT5G03280 131 / 5e-32 CKR1, PIR2, ORE3, ORE2, ERA3, EIN2, ATEIN2 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032853 [exp] 976 / 0 AT1G47240 793 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10010395 [exp] 720 / 0 AT1G47240 759 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10014868 [exp] 720 / 0 AT1G47240 763 / 0.0 NRAMP metal ion transporter 2 (.1) Lus10024069 [exp] 341 / 5e-111 AT1G15960 822 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10041652 [exp] 340 / 7e-111 AT1G15960 826 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10018132 [exp] 319 / 2e-102 AT1G15960 623 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10028542 [exp] 311 / 2e-99 AT1G15960 624 / 0.0 NRAMP metal ion transporter 6 (.1) Lus10026517 [exp] 123 / 3e-29 AT5G03280 1057 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Lus10013803 [exp] 122 / 4e-29 AT5G03280 627 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G121000 [exp] 810 / 0 AT1G47240 790 / 0.0 NRAMP metal ion transporter 2 (.1) Potri.007G050600 [exp] 728 / 0 AT2G23150 765 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.007G050700 [exp] 699 / 0 AT2G23150 768 / 0.0 natural resistance-associated macrophage protein 3 (.1) Potri.001G044900 [exp] 337 / 1e-109 AT1G15960 744 / 0.0 NRAMP metal ion transporter 6 (.1) Potri.005G181100 [exp] 328 / 5e-106 AT1G80830 550 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080400 [exp] 327 / 1e-105 AT1G80830 546 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.005G181000 [exp] 327 / 1e-105 AT1G80830 571 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.002G080500 [exp] 324 / 2e-104 AT1G80830 590 / 0.0 natural resistance-associated macrophage protein 1 (.1) Potri.016G090800 [exp] 128 / 5e-31 AT5G03280 1348 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1) Potri.006G127100 [exp] 125 / 6e-30 AT5G03280 1261 / 0.0 ORESARA 3, ORESARA 2, ENHANCED RESPONSE TO ABA3, ETHYLENE INSENSITIVE 2, CYTOKININ RESISTANT 1, NRAMP metal ion transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01566 [flax] [poplar] Nramp Natural resistance-associated macrophage protein
Representative CDS sequence Show only first row Show all	>Lus10004317 pacid=23151903 polypeptide=Lus10004317 locus=Lus10004317.g ID=Lus10004317.BGIv1.0 annot-version=v1.0 ATGAATCAGCGCCCGCAACCCGTAGAGGTTGATGACACCAAGGAAGACGACAAAGAGGATGAATCCAATCGCTTGCTACCGACGACATCTCCGTCGTCCG ACGGCGGAGATTCCGACGATGTCGCCTTCGAGGCGCGGGAGAAAATCGCGATTCTCGATGTGGAGCTTGAGAGCCCTGGATCGGCCGACGTGGATTACGT CCCGCCATTCTCCTGGAAAAAACTCTGGATGTTCACCGGTCCAGGGTTTCTAATGAGCATAGCGTTTCTAGATCCGGGGAATTTAGAGGGTGATCTCCAA TCGGGGGCGATCGCCGGCTACTCGCTTCTCTGGCTACTCATGTGGGCCACCGCCATGGGCTTGCTTATTCAGCTGCTCTCAGCTCGGGTTGGGGTCGCCA CTGGCCGCCACCTTGCAGAGCTCTGCAGAGACGAGTACCCTAATTGGGCTAGGTTGATACTTTGGTTCATGGCGGAGGTCGCTTTAATTGGCGCTGACAT TCAGGAGGTTATAGGTAGTGCGATAGCTATCCAGATTTTGAGCCGTGGGGTTTTGCCTCTCTGGGCTGGAGTTTTGATTACCGCTTTAGATTGTTTCATG TTTTTATTTCTAGAAAATTATGGAGTGAGGAAGCTCGAGGCTGTATTTGCAATTCTTATTGCTACTATGGCTTCATCGTTTGCTTGGATGTTTGCAGACG CCAAACCAAATGGAAAAGAACTTGTTATGGGTCTGTTAATACCAAGGCTTAGCTCGAGGACAATTAGGCAAGCTGTTGGTGTTGTGGGTTGCGTCATAAT GCCTCACAACGTCTTCTTGCATTCTGCCTTGGTTCAATCAAGGAAGATTGATCCTCAGAAAACAGGCCGAGTTCGAGAGGCATTGAACTACTACTCCATT GAATCATCAATTGCTCTTCTGGTGTCTTTTATTATCAATTTATTTGTCACGACTGTTTTCGCCAAGGGGTTCTACGGTACACCACAAGCTGATGGCATAG GACTGGTAAATGCCGGGCAGTATCTTCAAGAGAAGTACGGTGGTGGAGTTTTACCGATCCTCTATATTTGGGGTGTTGGCTTGTTGGCGGCTGGACAAAG CAGTACAATAACCGGTACATATGCTGGTCAATTTATAATGGGAGGATTCCTTAATCTTCGTTTGAAGAAATGGCTAAGGGCACTGATAACTCGAAGCTTT GCTATTGGACCAACCATCATAGTGGCAATAGTGTTCAATAAATCGGAAGCCTCATTAGATGTTTTGAATGAATGGTTGAATGTACTACAGTCGATGCAAA TTCCATTTGCACTTATCCCCCTTCTCACCTTGGTGGCAAAGGAGCAGGTCATGGGTGTCTTCAAAGTCGGGCCTATTATAGAGAGGCTGGCATGGACAGT AGCTGTTGTGGTAATGTCGATCAATGGGTATCTATTGATTGACTTCTTTATATCTGAAGTAAAAGGCTTGCTATTTGGTTTTGCGGCCTGCGGTGGGACA ATTGCATACATAGCATTCATCATTTATCTTGCTGTACATGGTGGCGTATTCTCCTCCAGTTCATTTGGGATGTTAGAAATGTCCAAGCAGAACTCCGCGG GTGATAATTAA
AA sequence Show only first row Show all	>Lus10004317 pacid=23151903 polypeptide=Lus10004317 locus=Lus10004317.g ID=Lus10004317.BGIv1.0 annot-version=v1.0 MNQRPQPVEVDDTKEDDKEDESNRLLPTTSPSSDGGDSDDVAFEAREKIAILDVELESPGSADVDYVPPFSWKKLWMFTGPGFLMSIAFLDPGNLEGDLQ SGAIAGYSLLWLLMWATAMGLLIQLLSARVGVATGRHLAELCRDEYPNWARLILWFMAEVALIGADIQEVIGSAIAIQILSRGVLPLWAGVLITALDCFM FLFLENYGVRKLEAVFAILIATMASSFAWMFADAKPNGKELVMGLLIPRLSSRTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPQKTGRVREALNYYSI ESSIALLVSFIINLFVTTVFAKGFYGTPQADGIGLVNAGQYLQEKYGGGVLPILYIWGVGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSF AIGPTIIVAIVFNKSEASLDVLNEWLNVLQSMQIPFALIPLLTLVAKEQVMGVFKVGPIIERLAWTVAVVVMSINGYLLIDFFISEVKGLLFGFAACGGT IAYIAFIIYLAVHGGVFSSSSFGMLEMSKQNSAGDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	0	1
AT3G50910			unknown protein		Lus10014290 [exp]	1.4	0.8651
AT3G06240			F-box family protein (.1)		Lus10027824 [exp]	2.0	0.8286
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	2.2	0.8666
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	6.7	0.8385
AT5G09890			Protein kinase family protein ...		Lus10005707 [exp]	7.3	0.8036
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	7.4	0.8160
AT5G24320			Transducin/WD40 repeat-like su...		Lus10023033 [exp]	10.2	0.7689
AT4G03000			RING/U-box superfamily protein...		Lus10021953 [exp]	11.2	0.7916
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	14.1	0.8077
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	14.5	0.8088

Compare expression of checked genes

Lus10004317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.