Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12420 957 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT5G51480 802 / 0 SKS2 SKU5 similar 2 (.1) AT4G25240 802 / 0 SKS1 SKU5 similar 1 (.1) AT5G48450 698 / 0 SKS3 SKU5 similar 3 (.1) AT4G22010 529 / 0 SKS4 SKU5 similar 4 (.1) AT1G76160 516 / 1e-178 SKS5 SKU5 similar 5 (.1) AT1G41830 514 / 9e-178 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21850 509 / 9e-176 SKS8 SKU5 similar 8 (.1) AT1G21860 507 / 2e-175 SKS7 SKU5 similar 7 (.1) AT1G55570 505 / 3e-174 SKS12 SKU5 similar 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028921 [exp] 1176 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 1028 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 1006 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031143 [exp] 795 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10031722 [exp] 793 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10038920 [exp] 774 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10027207 [exp] 766 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1) Lus10025860 [exp] 753 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 746 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112700 [exp] 1036 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 1009 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.015G127200 [exp] 827 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.012G126400 [exp] 819 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.014G177700 [exp] 763 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.002G227600 [exp] 542 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 539 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 535 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.004G180500 [exp] 534 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 531 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10004339 pacid=23161725 polypeptide=Lus10004339 locus=Lus10004339.g ID=Lus10004339.BGIv1.0 annot-version=v1.0 ATGGCTCTGTGTAAGCTTTCTTTCTTTGTGTTCCTTATCCACATTGGGTTATGCTCAGCTGCGGATCCCTTTGCTTTCTATGATTTTGAGGTCTCTTACA TTACTGCTTCTCCTCTCGGTGAACCCCAGCAGGTAATTGCCATTAACGGCAAGTTCCCTGGCCCGACAATAAACGTGACCACTAACAACAACGTTGTTGT CAATGTCAGGAACAAACTGGACGAACATCTCCTTATGCATTGGTCTGGAATCCAGCAAAGGAGAAGCTCATGGCAGGATGGACTTCCTGGCACAAACTGT CCAATCCCTCCTAAGTGGAACTGGACCTACCAGTTTCAGGTTAAGGACCAAGTTGGGAGTTTCTTCTACTTCCCTTCTCTCAACATGCAGAGAGCTTCTG GTGGATTTGGCAGCTTCATTATCAACAATAGAGACATCATTCCAATTCCTTTTAATAAGCCTGATGGGGACATTGTCATTTTGATTGGTGATTGGTACAA GCGGAATCACACGGCTTTGAGGAGAGCCCTAGATGCAGGGAGAGAATTGGGGATGCCAGATGGAGTTCTCATCAATGGCAAAGGGCCTTACCAATATAAC ACTACTTATGTCCCTGACGGCATTGACTATGAAACTATAACTGTTGAGCCAGGGAAAACTTACCGAGTGAGAGTGCACAATGTCGGAGTGTCGACAAGCT TGAATTTCAGGATCCAGAACCATAATTTGCTGTTAGCAGAGTCAGAGGGGTCATATACAGTGCAGCAGAACTATACTAGTTTAGATATACATGTAGGACA ATCCTATTCTTTCCTGATCACCATGGATCAGAACGCAAGCAGTGATTACTACATTGTGGCTAGTGCTAGAATGGTGAACGAGACGACATGGAAAAGGGTG ACTGGAGTTGCCATCTTGAGTTACACCAATTCCAAGGGGAAGGCAAGTGGTCCCTTACCGGCTGGACCTCAAGATGAATTTGACAAGACTTTTTCAATGA ACCAAGCAAGATCTATCAGATGGAATGTATCTGCAAGTGGAGCACGTCCAAACCCACAGGGTTCTTTCAGATATGGGACGATCAACGTGACTGACCTTTA CGTGCTGAGAAACAAGCCTCCGGTGACGATTAATGGGAAGCAAAGAACCACCCTTAGTGGGATATCATTCATCAATCCGGCTACCCCAATCAGGCTTGCA GATCAGTTCAAAGTGAAGGGAGTTTATAAACTTGACTTCCCTAACAAACCTCTCACCGGTCCACCAAAGTTGGAGACATCAATCATCAATGGGACATACA GAGGATTCATGGAAGTCATTCTTCAGAACAATGAAACCAAGGTGCAGAGCTATCACCTGAGTGGATATGCAGTTTTTGTTGTTGGGATGGACTATGGAGA ATGGTCTGAGACCAGCAGGGGCACATATAACAAGTGGGATGGCATTGCCCGTACAACTGTTCAAGTGTATCCCGGAGCATGGACAGCGATTCTGGTATCA CTCGACAATGTCGGAGTATGGAACCTGAGAACAGAAAATCTGGACTCATGGTACCTGGGACAAGAAACATACGTGAGAGTTGTGAATCCTGAGGAAACAA ACAAGACAGAGCTGCCCATCCCAGACAATGCTCTCTTCTGTGGCGCCCTTGCTAAAATGCAGAAGCCACAGCAGATCTCATCCGCACCGTCAATTTTCAA AGGCGGCAACTTGAACATAGTGATTACACTGCTTTATTTGGTTTCTGCTGCAATCTCCATCTTCAACTGA
AA sequence Show only first row Show all	>Lus10004339 pacid=23161725 polypeptide=Lus10004339 locus=Lus10004339.g ID=Lus10004339.BGIv1.0 annot-version=v1.0 MALCKLSFFVFLIHIGLCSAADPFAFYDFEVSYITASPLGEPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDEHLLMHWSGIQQRRSSWQDGLPGTNC PIPPKWNWTYQFQVKDQVGSFFYFPSLNMQRASGGFGSFIINNRDIIPIPFNKPDGDIVILIGDWYKRNHTALRRALDAGRELGMPDGVLINGKGPYQYN TTYVPDGIDYETITVEPGKTYRVRVHNVGVSTSLNFRIQNHNLLLAESEGSYTVQQNYTSLDIHVGQSYSFLITMDQNASSDYYIVASARMVNETTWKRV TGVAILSYTNSKGKASGPLPAGPQDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGTINVTDLYVLRNKPPVTINGKQRTTLSGISFINPATPIRLA DQFKVKGVYKLDFPNKPLTGPPKLETSIINGTYRGFMEVILQNNETKVQSYHLSGYAVFVVGMDYGEWSETSRGTYNKWDGIARTTVQVYPGAWTAILVS LDNVGVWNLRTENLDSWYLGQETYVRVVNPEETNKTELPIPDNALFCGALAKMQKPQQISSAPSIFKGGNLNIVITLLYLVSAAISIFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10004339 [exp]	0	1
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10028921 [exp]	1.0	0.9128
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10014978 [exp]	2.8	0.8281
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10017339 [exp]	5.7	0.7879
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	9.5	0.7435
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10008615 [exp]	11.0	0.8207
AT4G33625			unknown protein		Lus10020442 [exp]	14.3	0.7641
AT3G07460			Protein of unknown function, D...		Lus10038238 [exp]	15.3	0.7232
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10017868 [exp]	15.3	0.7524
AT1G67570			Protein of unknown function (D...		Lus10032513 [exp]	18.4	0.7287
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10029102 [exp]	21.2	0.7123

Compare expression of checked genes

Lus10004339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.