Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17500 236 / 2e-77 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47220 203 / 1e-64 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT2G44840 142 / 4e-41 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47230 98 / 2e-23 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT4G17490 92 / 1e-21 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G51190 91 / 2e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61590 87 / 2e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23240 87 / 3e-20 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT5G07580 88 / 4e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G13330 84 / 3e-19 AP2_ERF RAP2.6L related to AP2 6l (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040165 [exp] 451 / 5e-161 AT4G17500 260 / 2e-86 ethylene responsive element binding factor 1 (.1) Lus10016211 [exp] 103 / 3e-26 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 100 / 5e-25 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 97 / 4e-24 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 96 / 1e-23 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 94 / 6e-23 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10042996 [exp] 95 / 9e-23 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 93 / 5e-22 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10029334 [exp] 91 / 7e-22 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154100 [exp] 249 / 6e-82 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.003G081200 [exp] 239 / 4e-78 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.003G150700 [exp] 172 / 3e-52 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.001G079900 [exp] 166 / 6e-50 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.014G046600 [exp] 142 / 6e-41 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G046700 [exp] 131 / 8e-37 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G046900 [exp] 114 / 3e-30 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 105 / 3e-27 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.011G061700 [exp] 97 / 3e-24 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1) Potri.004G051700 [exp] 97 / 3e-24 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10004368 pacid=23151930 polypeptide=Lus10004368 locus=Lus10004368.g ID=Lus10004368.BGIv1.0 annot-version=v1.0 ATGCAAGGAGAGATCATAGCAACGGAGTCCGATCACGCGCTCCTTGAATCGATTAGTCGACACTTGCTCGGCGAATCAATCACTACTACTTCTACTTCTT CTTGTATGAATCCTACCGCCGCCGGCCGTCCTGTATTTTCCCGGAACGTGAGCTTTGGTACCATGTACCCATGTCTTACAGAGAATTGGGGAGATTTGCC CTTGAAAATGGACGATTCGGAGGACATGCTTCTCTTCGGCGTCCTCCGGGATGCTTTCCACGGCGGGTGGGCTCCCAACCCGGATCAGCAATCTTTGGAT TTCCCTCCAGTTTTGAGTCATCCGGAGGTTAAATTGGAGCCGGCGGTGGTTAACTATCCTCCGGTTGAGGTTCAAGTGCCGTCGACGCCTGCGGCGGTGG AGGTGGTGCCGCCGAAGGGGAAGCACTACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGAGACCCGGCTAAGAACGGGGCTCG GGTCTGGTTGGGAACCTTCGAGACGGCAGAGGACGCGGCACTCGCTTACGATCGGGCGGCTTACCGGATGCGTGGGTCCAGGGCGCTGCTGAATTTCCCG TTGAGGGTTAATTCAGGGGAGCCTGATCCGGTGAGGATTACCACGAAGAGATCATCGCCGGAGCCGACTGGTTCGTCGACTTCTTCGTCTTCGTCCGGGT CGGATAGCGGGTCGCCTAAGACCAACAAGAGGCGGAAGAAGGCCGGGTCTTCGGGTATTGTTGCCGCTACTGCTAAGCAAGTGGGTGCGGGTGATGTCGA CGGGTCGGGTATGGGAAATGCGGTTGGATTGGGCTCGTCGGCATACCAAGTGGGAGTGAGTAGTAGTACACATGGCGGTCAGTTATTGGCTGCCTAG
AA sequence Show only first row Show all	>Lus10004368 pacid=23151930 polypeptide=Lus10004368 locus=Lus10004368.g ID=Lus10004368.BGIv1.0 annot-version=v1.0 MQGEIIATESDHALLESISRHLLGESITTTSTSSCMNPTAAGRPVFSRNVSFGTMYPCLTENWGDLPLKMDDSEDMLLFGVLRDAFHGGWAPNPDQQSLD FPPVLSHPEVKLEPAVVNYPPVEVQVPSTPAAVEVVPPKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFP LRVNSGEPDPVRITTKRSSPEPTGSSTSSSSSGSDSGSPKTNKRRKKAGSSGIVAATAKQVGAGDVDGSGMGNAVGLGSSAYQVGVSSSTHGGQLLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10004368 [exp]	0	1
AT4G25030			unknown protein		Lus10041415 [exp]	1.0	0.9185
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	1.4	0.9170
AT2G33580			Protein kinase superfamily pro...		Lus10042226 [exp]	2.2	0.8831
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015998 [exp]	2.4	0.8888
AT1G34300			lectin protein kinase family p...		Lus10013252 [exp]	3.5	0.8839
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	8.5	0.8574
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	9.2	0.8547
AT3G57450			unknown protein		Lus10042063 [exp]	11.2	0.8453
AT5G28830			calcium-binding EF hand family...		Lus10009175 [exp]	12.0	0.7854
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	12.0	0.8475

Compare expression of checked genes

Lus10004368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.