Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47230 127 / 2e-34 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT4G17490 125 / 4e-34 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G07580 120 / 4e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 116 / 4e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61600 113 / 1e-29 AP2_ERF ERF104 ethylene response factor 104 (.1) AT4G17500 105 / 2e-26 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G61590 102 / 5e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44840 102 / 6e-26 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47220 100 / 8e-25 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT3G23230 96 / 2e-24 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040167 [exp] 432 / 1e-153 AT5G07580 130 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Lus10004752 [exp] 121 / 9e-33 AT5G07580 122 / 4e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10032498 [exp] 119 / 2e-32 AT5G07580 144 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10042995 [exp] 115 / 7e-31 AT5G07580 129 / 1e-36 Integrase-type DNA-binding superfamily protein (.1) Lus10007841 [exp] 113 / 1e-29 AT5G47230 121 / 4e-33 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) Lus10032499 [exp] 113 / 2e-29 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 113 / 2e-29 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10011830 [exp] 102 / 2e-26 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10025430 [exp] 101 / 3e-26 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154200 [exp] 127 / 3e-34 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.003G080600 [exp] 127 / 4e-34 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.003G150800 [exp] 122 / 1e-32 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079600 [exp] 120 / 3e-32 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 119 / 2e-31 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 116 / 5e-31 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.014G046600 [exp] 107 / 1e-27 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 105 / 2e-27 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046700 [exp] 105 / 4e-27 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.003G081200 [exp] 105 / 1e-26 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10004369 pacid=23151913 polypeptide=Lus10004369 locus=Lus10004369.g ID=Lus10004369.BGIv1.0 annot-version=v1.0 ATGGCGGACGGACTGCTCGAATTACAACGCCAGCTCTTCGACGACGACCAACTTTTCCTCTCCGGCTGCGAATCATCATCATCATCAACAACGAACACCT TCTCCTCCAACGCTGCTTCCACCTGTGGCTCGGCCATTTCGGTCTCCGATTACTACTTTGACGACTACGAAATCGAATTACTCGATTTCGCCAAGGAGCC AAACGAGCACGAAATCATCCAACTCGATACCGTCCTCAATTATCCCGTCGTAATTGATCTCACCTCACCAAAATTCCCAATTCCTAACCCTACATTCTCC GACCTCGAATCCAAACCTAAAATTGCGAGCGTACCTCAATTTTCCCTTGATTATTTCAATTTTGAGACCCAAAGGAAACCGTCCAAGTCGAATCACAAGC CGACGGAATGGATCCGATTTGGCGGGGACGACGATGATTGCGGGATCCAATTACTGGGAGTAGAGCGAGATGAAACGAGATCTCGAGGTGGAAGCAATAG TAAGGAAGGGAGGCATTACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAGTACGCAGCGGAGATCCGAGATCCGAGCCAGAAAGGCTCGCGAATGTGGCTG GGGACCTACGACTCGCCGATAGATGCCGCCAGAGCGTACGACCGAGCAGCCTTCAAGCTGCGGGGCCGCAAGGCGATTCTCAACTTTCCGGCGGAAGCTG CCAAGTACAAGCTGCTGGAACCTACGGCGGCGGCGGCGGTTCAGGAGGGAGGCAATAGCGTTGACAGTGGTCGGAAGCGTCGAAGAGAAGAGGACGGGGA AGAGGAACGCAGAGTGAAGGCGGCGGCGGATTTTCCGACCTCGGAGAGTAGCATTGGTAGTAGTAGTAGAATGCATATGGAGATTTGGAATGAGATTTCG CGGCGAAGTAGCGATCTTGGGTTTTGGTGTTAA
AA sequence Show only first row Show all	>Lus10004369 pacid=23151913 polypeptide=Lus10004369 locus=Lus10004369.g ID=Lus10004369.BGIv1.0 annot-version=v1.0 MADGLLELQRQLFDDDQLFLSGCESSSSSTTNTFSSNAASTCGSAISVSDYYFDDYEIELLDFAKEPNEHEIIQLDTVLNYPVVIDLTSPKFPIPNPTFS DLESKPKIASVPQFSLDYFNFETQRKPSKSNHKPTEWIRFGGDDDDCGIQLLGVERDETRSRGGSNSKEGRHYRGVRQRPWGKYAAEIRDPSQKGSRMWL GTYDSPIDAARAYDRAAFKLRGRKAILNFPAEAAKYKLLEPTAAAAVQEGGNSVDSGRKRRREEDGEEERRVKAAADFPTSESSIGSSSRMHMEIWNEIS RRSSDLGFWC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47230	AP2_ERF	ATERF5, ATERF-5...	ETHYLENE RESPONSIVE ELEMENT BI...		Lus10004369 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	2.4	0.9523
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010864 [exp]	4.9	0.9402
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029946 [exp]	5.3	0.9060
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	5.5	0.9425
AT1G10340			Ankyrin repeat family protein ...		Lus10038608 [exp]	5.7	0.9228
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	6.6	0.9395
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	6.7	0.9323
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	7.3	0.9323
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10011039 [exp]	9.8	0.9130
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	9.9	0.9291

Compare expression of checked genes

Lus10004369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.