Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54870 501 / 4e-180 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 452 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 107 / 3e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 103 / 1e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 101 / 7e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G62610 100 / 2e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4) AT2G29260 100 / 6e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 99 / 7e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G24360 100 / 8e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 99 / 1e-23 SAG13 senescence-associated gene 13 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029937 [exp] 602 / 0 AT1G54870 503 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021931 [exp] 382 / 2e-133 AT3G05260 364 / 3e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033745 [exp] 375 / 1e-130 AT1G54870 365 / 8e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 120 / 4e-31 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 108 / 3e-27 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040730 [exp] 109 / 4e-27 AT2G29260 405 / 2e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 108 / 5e-27 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 111 / 6e-27 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016354 [exp] 107 / 9e-27 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023900 [exp] 528 / 0 AT1G54870 493 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G149201 [exp] 394 / 2e-138 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G092400 [exp] 291 / 5e-99 AT1G54870 301 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G050700 [exp] 184 / 3e-57 AT1G54870 182 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G023900 [exp] 174 / 8e-53 AT1G54870 172 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 119 / 5e-31 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 117 / 5e-30 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 109 / 1e-27 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 108 / 1e-27 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 107 / 6e-27 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10004471 pacid=23169704 polypeptide=Lus10004471 locus=Lus10004471.g ID=Lus10004471.BGIv1.0 annot-version=v1.0 ATGTTGTCCAGGAGTTTAGCGTCGATCTGCAGGTTTCAATCTTCAATAATCTCACGGTGTCCGAACGAATTCCACTTCAGAAATTTCCATAAAACAGTCC TCGTCCCTGCAAGTAGACAGAGAAACAAATTCTGTCAGGTCGTTAGAATGGCTTCTGGTGGTGGCGATCGGACGTTTCCTTCTCAGCAGCAGAGGGACCA GCCTGGTAAAGAACATGTTATGGACCCCACCCCTCAATTCTCCAGCCCTGACTATAAGCCTTCCAATAAGCTTCAGGGGAAGGTTGCACTGGTGACAGGA GGAGACTCAGGGATCGGCAGAGCAGTCTGCTACACCTTCGCCATGGAAGGCGCAACGGTGGCCTTCACCTACGTTAAGGGCAAAGAAGATAAGGACGCTC AAGACACTCTCCAGATTCTGAAGAAGGCCAAAACCCCTGACGCCAAGGACCCCATAGCCATCCCTGGTGACCTCGGCTTCGACGAGAACTGCCGTAGAGC TGTGGAGGAGGTCGCCAACGCTTTCGGCAGGATCGATGTCCTCATCAACAACGCCGCCGAGCAGTACGAGTGTAGCTCCGTCGAGGAAATCGACGAGCCT AGGCTTGAACGCGTCTTCCGCACCAACATCTTCTCCTACTTCTTCATGACCCGGCACGCACTGAAGCTCATGAAGGAAGGAAGCGCGATAATCAACACGA CGTCGATCAACGCGTACAAGGGGAACGCGGAGCTGCTGGACTACACGTCGACGAAAGGCGCGATCGTGGCGTTCACAAGGGGGCTAGCTCTCCAGCTGGT GAACAAAGGTATTCGAGTGAACGGAGTGGCTCCGGGTCCGATATGGACGCCGCTGATTCCGGCGTCCTTCAGGGAAGATAAGGTGACGAGCTTCGGGAAG CAGGTGCCGATGCAGAGAGCTGGACAGCCGAGCGAGGTGGCTCCGTCGTATGTGTTCCTGGCGTGTAACCATTGCTCGTCGTACATCACTGGGCAGGTGC TTCACCCCAATGGCGGCGTGGTGGTGAACGGTTGA
AA sequence Show only first row Show all	>Lus10004471 pacid=23169704 polypeptide=Lus10004471 locus=Lus10004471.g ID=Lus10004471.BGIv1.0 annot-version=v1.0 MLSRSLASICRFQSSIISRCPNEFHFRNFHKTVLVPASRQRNKFCQVVRMASGGGDRTFPSQQQRDQPGKEHVMDPTPQFSSPDYKPSNKLQGKVALVTG GDSGIGRAVCYTFAMEGATVAFTYVKGKEDKDAQDTLQILKKAKTPDAKDPIAIPGDLGFDENCRRAVEEVANAFGRIDVLINNAAEQYECSSVEEIDEP RLERVFRTNIFSYFFMTRHALKLMKEGSAIINTTSINAYKGNAELLDYTSTKGAIVAFTRGLALQLVNKGIRVNGVAPGPIWTPLIPASFREDKVTSFGK QVPMQRAGQPSEVAPSYVFLACNHCSSYITGQVLHPNGGVVVNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10004471 [exp]	0	1
AT4G21020			Late embryogenesis abundant pr...		Lus10014004 [exp]	5.5	0.7913
AT5G27260			unknown protein		Lus10007133 [exp]	8.1	0.8045
AT4G16260			Glycosyl hydrolase superfamily...		Lus10039233 [exp]	9.2	0.7438
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014403 [exp]	9.5	0.6554
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007067 [exp]	10.7	0.6855
AT5G25180		CYP71B14	"cytochrome P450, family 71, s...		Lus10033634 [exp]	14.7	0.7477
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10014900 [exp]	15.7	0.6690
AT2G24960			unknown protein		Lus10042715 [exp]	22.5	0.6926
AT3G63170			Chalcone-flavanone isomerase f...		Lus10032083 [exp]	31.1	0.6680
AT2G02850		ARPN	plantacyanin (.1)		Lus10041848 [exp]	33.8	0.6328

Compare expression of checked genes

Lus10004471 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.