Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05380 407 / 4e-126 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) AT5G27610 355 / 9e-107 MYB ATALY1 ARABIDOPSIS THALIANA ALWAYS EARLY 1, ALWAYS EARLY 1, DIRP ;Myb-like DNA-binding domain (.1) AT3G21430 281 / 2e-79 MYB ATALY3 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) AT1G67500 145 / 4e-35 ATREV3 recovery protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029910 [exp] 1432 / 0 AT3G05380 549 / 1e-179 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Lus10033961 [exp] 271 / 1e-75 AT3G21430 941 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Lus10029911 [exp] 207 / 2e-54 AT1G67500 1431 / 0.0 recovery protein 3 (.1.2) Lus10002879 [exp] 178 / 2e-45 AT3G21430 764 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020500 [exp] 499 / 2e-159 AT3G05380 807 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Potri.005G029000 [exp] 491 / 1e-156 AT3G05380 813 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 2, ALWAYS EARLY 2, DIRP ;Myb-like DNA-binding domain (.1.2.3.4.5) Potri.008G216600 [exp] 275 / 7e-77 AT3G21430 1006 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Potri.010G023201 [exp] 271 / 7e-76 AT3G21430 939 / 0.0 ARABIDOPSIS THALIANA ALWAYS EARLY 3, ALWAYS EARLY 3, DNA binding (.2) Potri.013G022200 [exp] 175 / 3e-44 AT1G67500 1426 / 0.0 recovery protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06584 [flax] [poplar] DIRP DIRP CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004489 pacid=23169694 polypeptide=Lus10004489 locus=Lus10004489.g ID=Lus10004489.BGIv1.0 annot-version=v1.0 ATGGTCGTCGATCCAATGCAACTTCTGGCTCTAAATCCCCCTTACAGGTTGAATGATGTTTACTACATCACGAAGCAGATAATCCCGGCCTTGCAAAGAG TGTTTGGACTTGTTGGTGCTGATCTAAACCGGTGGTTTTCCGAGATGCCTCGTCCCGCCAGGGGAAGTTTGGCCAAGCATCGCCCGCAGTTTGCTCCAAA TCAATACAGGACGAGGATCGACTTTTACTACCTGTCTCAGCATTGCTTGATCTGTGGAGATTGTGAGAAGTGTTGGGAGAATGAAGCAGCTGTTGCTACG GCTATGATTGGAAGGACTTCCAAGAAGAGGAAATCTACGTATAAGTTGGGGCCACCTTGGAGTGACACTGAGATTCAGAAGTTCTACAAAGCCTATCGTA GACATGGGAAGGACTGGAAAAGGGTTGCTGCTGAAGTTGGTACTCGATCTGTGGAAATTGTGGAGGCCCTTTACAATTTACATCGGGCATACTTATCCCT ACCTGAGGGGACAGCTTCAGTGCACGGCCTTATAGCAATGCTTTCGGATCATTATAGTGTTCATCAGGCGCCCAGGGGCAGGGAAGCAGAAGACAGTGGC ATGCCACTTGTACCCCACAAATCTCTCAAACGCAAGAGAGTGAAAGTCTCGATGAGCGAGCCGGCAGACCGCTCTGTTTCAACATCAACAGATGGATGCC TGTCACTCTTAAAGAGAGTACGTTTACTTGGTGGTCAGCCTCGTGTAGTTGGGAAAAGGACACCCCGTTTTCCTGTTGGACATTCATCCACCAGAGACAA TCAGAGGAATCATGGTTTCCAAAACCGGAAGTCGGACCTTGCTTCCAAGGAAGAACAGGTGCTTTCTCCGTTGTACAAAGACGTACTCTTTATACCCTTA CTTTTTTTTATGCACTCTGGCTCATCTCGAGAAAAGCTTCGTGATGCTAGAAGTAAGGGCAGTAACAATCCTGCTGCCTATGATGGAGATGCAAGCTTGC GGGACGTTGATTGTGTTGACTTTGCCGATATTTGTAAAAAGGGAAAGAAGATTCTTGGGAAGAAAATGAAAGTTGGAGTGACGGAGCGTAAAAAGCTTGA TGACAGTGAAGGTCAGTTCTGTGGCTTGAGCCAAAATGTTGACACAAAGGTTGTAAAAGGAAAGGTGAAAGTGACTTCTCCTAATGGCGAAAGCAGCAGC AAGAAACTTTTGTCTGGAGATGAATTCTCTGCTCTGGATGCGTTGCAAACATTGGCTCATCTCTCTGCGATGGAATCTGAATCTTCTGACCAGCTGAAGG AAGAAAAAACTATAGTTGGCGACGAAATAGCTTCAATTCCACAAACTACGTGTGTCAGCCATGGCACTACCGAAATCCCTCCCATGAAGGAAGCTCTACC CGACATGGTAACCAGAGTTCAAGCTACCACCTCAAAGAACTCAAAGACAGGAAGAATCACATCGGTTGATGCTAGACCTGATACAGAGGCCAAGCAGAGG AATGGACCGTCAAATGGTAATACCCTGAAGAGGAAACGCCAGTCTTCGGTATCAAGAGCATTGAAGGTTGAAGCTGAAACAAAAAGCCCTGTTACTGATT CAGTGACGACCAAGGATTTTCCTGAGGTAAAGTTGCCTGCTAAAGAGGAACAAACTAGTGAAGTGTCTGCTCCTTCCGGACAATTGAAGACATGTTTCGA TAATAGTGATGATCAAACAAATGTAGTAAAAAGTCAAGCCAGTTCGCCATTGCCTTCAAGAACAAGTGAACGAAAAAGTAAAGCTAGAGTATCTAATCCA AAGGAAGAGTTTCCTTGTTTCCTTTCTCCTAAGCTTCGCAGATGGTCTAGATTTGAATGGTTTTGTAGTGCAATTGACTACCCTTGGTTTGCCAAACGAG AATTTGTTGAGTACTTGAATCACGTTGGGCTTGGCCACATTATTACTCTCACTCGCGTCGAATGGGGTGTCATAAGAAGTTCTCTGGGAAAACCTCGGAG GTTCTCCCAACATTTTCTTCAGGATGAAAGAGGGAAACTTCAGCAGTACCGCGAGTCCGTGAGGAAACATTACAGTGAGCTCCGTACCGGCATCAGAAAG GGACTTCCGACAGATTTAGCAAGGCCTTTGTATGTCGGGCAACGTGTCAATGCTATTCATCCGCAGAGTAGAGAACTCTATACTGGGAGAGTCCTTACCG TTGATCATGACGAATGCAGAGTGCAGTTTGACCATCCGAACATTGGAGTTGAACTCGTTAAGGATATAGACTGCATGCCTTTTGATCAAATGGAGAACAT GCCTGAGGCTCTTAAGAAGCTGAAGCACTTTGATGTTTCAAAGGATGTTCAAATCAATAGACATCCGGATACTCGAAGGCTCGCCTCAGGTACTGGACCG AGTCCAGGAAACGCCAGATTAAACCAGGCTCAGGTCGTCTGTTCAGAAGCATTGAATACGAGGCAATGCCATACCCAGCCAGCAAACCAGGGACTACATT GGTTGAACTTGGGCAACTCCAGTTTATTTGCGGCCATGGAAGACACTCCGTACCAGGGTTCCTTTGCTTCACAAGAGTTGGGATCTGCTGTAGTTGAAAT CGTACAAAAATCGAGACAACAAGCACATAAGATGGTTGATGCTGCTCTCCAGGCATTGTCATCTGAGAAAGAAGGGGCATCTCAAGGGGCAGATGCTTTC GCAACAATCATGGAGGCCCTAGATGGTGTGGACACAACAACTCGAGGTTTACCAGAGCCTCGGCAGCAAGTCACTGATGGCAACGATTCGGCAGAGTCCC ACTCGAACTCCTCTGCAGCTTCATCTTCCCCGTCTGAGCTTATGACTTCATGTGTTGCTACTTTTCTCATGATCAAGATGTTTACCGAGCGGCAGTATCC TCCTTCGGATGTGGCTCAGATGATAGATTCTGCGGTGACCAACTTGCGACCTTCATGCTCCCAGAATCTGCCGATATATCGAGAGATACAGACGTGCATG GGGAGAATCAAGACTCAGATATTAGCATTGGTACCGACATGA
AA sequence Show only first row Show all	>Lus10004489 pacid=23169694 polypeptide=Lus10004489 locus=Lus10004489.g ID=Lus10004489.BGIv1.0 annot-version=v1.0 MVVDPMQLLALNPPYRLNDVYYITKQIIPALQRVFGLVGADLNRWFSEMPRPARGSLAKHRPQFAPNQYRTRIDFYYLSQHCLICGDCEKCWENEAAVAT AMIGRTSKKRKSTYKLGPPWSDTEIQKFYKAYRRHGKDWKRVAAEVGTRSVEIVEALYNLHRAYLSLPEGTASVHGLIAMLSDHYSVHQAPRGREAEDSG MPLVPHKSLKRKRVKVSMSEPADRSVSTSTDGCLSLLKRVRLLGGQPRVVGKRTPRFPVGHSSTRDNQRNHGFQNRKSDLASKEEQVLSPLYKDVLFIPL LFFMHSGSSREKLRDARSKGSNNPAAYDGDASLRDVDCVDFADICKKGKKILGKKMKVGVTERKKLDDSEGQFCGLSQNVDTKVVKGKVKVTSPNGESSS KKLLSGDEFSALDALQTLAHLSAMESESSDQLKEEKTIVGDEIASIPQTTCVSHGTTEIPPMKEALPDMVTRVQATTSKNSKTGRITSVDARPDTEAKQR NGPSNGNTLKRKRQSSVSRALKVEAETKSPVTDSVTTKDFPEVKLPAKEEQTSEVSAPSGQLKTCFDNSDDQTNVVKSQASSPLPSRTSERKSKARVSNP KEEFPCFLSPKLRRWSRFEWFCSAIDYPWFAKREFVEYLNHVGLGHIITLTRVEWGVIRSSLGKPRRFSQHFLQDERGKLQQYRESVRKHYSELRTGIRK GLPTDLARPLYVGQRVNAIHPQSRELYTGRVLTVDHDECRVQFDHPNIGVELVKDIDCMPFDQMENMPEALKKLKHFDVSKDVQINRHPDTRRLASGTGP SPGNARLNQAQVVCSEALNTRQCHTQPANQGLHWLNLGNSSLFAAMEDTPYQGSFASQELGSAVVEIVQKSRQQAHKMVDAALQALSSEKEGASQGADAF ATIMEALDGVDTTTRGLPEPRQQVTDGNDSAESHSNSSAASSSPSELMTSCVATFLMIKMFTERQYPPSDVAQMIDSAVTNLRPSCSQNLPIYREIQTCM GRIKTQILALVPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10004489 [exp]	0	1
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001586 [exp]	5.7	0.9312
AT3G63430			unknown protein		Lus10024836 [exp]	7.7	0.9277
AT5G23910			ATP binding microtubule motor ...		Lus10027488 [exp]	8.5	0.9330
AT1G06070	bZIP	AtbZIP69	Basic-leucine zipper (bZIP) tr...		Lus10008150 [exp]	10.0	0.8698
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	13.5	0.9169
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10016397 [exp]	15.1	0.9280
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10029700 [exp]	15.7	0.9280
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	16.6	0.9280
AT5G11560			catalytics (.1)		Lus10022144 [exp]	17.9	0.9083
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10029646 [exp]	18.2	0.9154

Compare expression of checked genes

Lus10004489 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.