Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 340 / 1e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 308 / 4e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 296 / 3e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 293 / 5e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 291 / 3e-99 SAG13 senescence-associated gene 13 (.1.2.3) AT2G30670 288 / 4e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 285 / 4e-97 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29330 285 / 1e-96 TRI tropinone reductase (.1) AT2G29150 282 / 1e-95 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 282 / 1e-95 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040271 [exp] 491 / 5e-178 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 322 / 2e-111 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040730 [exp] 305 / 2e-103 AT2G29260 405 / 2e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 298 / 1e-101 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 291 / 4e-99 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 291 / 7e-99 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001560 [exp] 294 / 2e-98 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 281 / 3e-95 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 280 / 7e-95 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059100 [exp] 367 / 2e-129 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 305 / 1e-103 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 296 / 3e-101 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 294 / 1e-100 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G142600 [exp] 288 / 4e-98 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039500 [exp] 284 / 1e-96 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 278 / 4e-94 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 277 / 8e-94 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 268 / 4e-90 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 221 / 3e-72 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10004704 pacid=23174254 polypeptide=Lus10004704 locus=Lus10004704.g ID=Lus10004704.BGIv1.0 annot-version=v1.0 ATGGCAGCGACAAACGGCCACCACCATTCCCCGACGGCGAGATGGTCCCTCCACGGCATGAGGGCTCTCGTCACCGGCGGTACTCGTGGCATCGGATGTG CAACAGTGGAGGAACTTGCTGGACTGGGAGCTAAGGTGCATACGTGCTCGAGAAACGAAGCTGAGCTCAACCAGTTCTTGCAGCAATGCAAGGAGAAAGG CTTCACCGTTTCCGGTTCAGTCTGCGACGTGTCGTCTCCTTCCGAAAGGCAGAAGCTCGTCCGCGATGTTTCCGCTCTTTACAACGGCACTCTCAACATT CTCGTGAATAACGTCGGGACGAATGCAAGGAAGCCGACTACGGAGTATACAACGGAGGAGTACCTGAGACTGATGTCCGTGAATTTGGAATCGGCGTACC ATCTCTGCCAATTGGCACACCCGCTTCTGAAGAAATCAGGAGCTGGATCAGTCGTCTTCGTTTCGTCGGTCGCCGGTGTAGTCCACATAGGCAGCGGATC AATTTATGGTCTCTCCAAAGGTGCGATAAACCAGCTTACCAAAAATCTGGCTTGTGAGTGGGCAAAGGATAACATCAGGGCAAACTGCGTGGCTCCCTGG TACACCAAAACTTCCCTAGTTGAACATCTGCTGGAGAAGAAGGATTTCTTGCAGCAGATAGTGGCGAGAACGCCATTGCAGAGGGTTGGGGAACCGAATG AAGTGTCAAGCTTGGTGGGTTTCCTGTGTTTACCTGCTGCTTCTTACATCACTGGACAGGTTATCTCTGTGGACGGTGGAATGACTGTGAATGGGTTCAA CCCTCCGATCAACCTAGATTGA
AA sequence Show only first row Show all	>Lus10004704 pacid=23174254 polypeptide=Lus10004704 locus=Lus10004704.g ID=Lus10004704.BGIv1.0 annot-version=v1.0 MAATNGHHHSPTARWSLHGMRALVTGGTRGIGCATVEELAGLGAKVHTCSRNEAELNQFLQQCKEKGFTVSGSVCDVSSPSERQKLVRDVSALYNGTLNI LVNNVGTNARKPTTEYTTEEYLRLMSVNLESAYHLCQLAHPLLKKSGAGSVVFVSSVAGVVHIGSGSIYGLSKGAINQLTKNLACEWAKDNIRANCVAPW YTKTSLVEHLLEKKDFLQQIVARTPLQRVGEPNEVSSLVGFLCLPAASYITGQVISVDGGMTVNGFNPPINLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004704 [exp]	0	1
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026178 [exp]	2.0	0.9666
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014082 [exp]	2.8	0.9564
AT4G27290			S-locus lectin protein kinase ...		Lus10038552 [exp]	3.7	0.9660
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	4.2	0.9599
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	8.4	0.9496
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	11.5	0.9484
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10037425 [exp]	12.0	0.9400
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	12.0	0.9493
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10029552 [exp]	14.0	0.9238
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027585 [exp]	14.1	0.9334

Compare expression of checked genes

Lus10004704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.