Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 380 / 5e-112 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 323 / 4e-91 transmembrane receptors;ATP binding (.1.2) AT1G27180 313 / 1e-87 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 292 / 4e-81 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41540 288 / 7e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 278 / 3e-77 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 275 / 1e-76 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 273 / 2e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 271 / 4e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G18360 269 / 5e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008519 [exp] 1446 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10008526 [exp] 1432 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 1373 / 0 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002249 [exp] 1371 / 0 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 1293 / 0 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 1034 / 0 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 981 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 870 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007813 [exp] 840 / 0 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 401 / 1e-121 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 400 / 2e-121 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 402 / 2e-120 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 388 / 2e-120 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 402 / 3e-120 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 397 / 3e-120 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 400 / 2e-119 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 403 / 3e-119 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 397 / 9e-119 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 397 / 4e-118 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10004719 pacid=23162924 polypeptide=Lus10004719 locus=Lus10004719.g ID=Lus10004719.BGIv1.0 annot-version=v1.0 ATGAGTTATTTGAGAGAAGTTGCTACTGCTGTTGCCTTGCTTCTCCCTTTCATTCTTCTCAACAAGTTTTGGAGACCAAATTCCAAAGACTCAATCGTCA ACGATGATGACGATTCAACATCTGAAGTTGATGCCATATCCGACTCCACAAATCCCTCTGGTTCATTTCCCTCCGTGGAGTATGAAGTGTTTTTGAGTTT CAGGGGTCCAGATACTCGTGAACAGTTCACCGATTTCCTATATCAGTCTCTCCGTCGCTATAAGATTCACACTTTTAGGGACGACGATGAGCTACTCAAA GGAAAAGAAATAGGGCCCAACCTCCTACGAGCAATTGATCAGTCCAAAATTTACGTCCCGATCATATCGAGCGGATATGCTGATAGTAAGTGGTGTCTTA TGGAGCTTGCTGAAATTGTGAGACGTCAAGAGGAGGACCCTCGACGCATCATACTTCCTATTTTTTATATGGTGGATCCAAGTGACGTACGACATCAGAC TGGATGTTATAAAAAAGCATTTCGAAAACACGCAAATAAATTTGATGGACAGACCATACAAAACTGGAAAGATGCTCTAAAGAAGGTCGGAGACTTAAAA GGATGGCACATCGGAAAGAATGACAAGCAGGGAGCTATAGCAGACAAAGTATCAGCAGATATATGGTCACACATAAGCAAGGAAAATCTCATTTTAGAAA CCGATGAGTTGGTTGGAATTGATGATCACATAACAGCCGTATTAGAAAAATTGAGTTTAGACTCTGAAAATGTGACAATGGTCGGCCTTTATGGTATGGG TGGAATAGGCAAGACGACCACTGCAAAGGCGGTTTATAACAAGATTTCTTCTTGTTTCGATTGTTGTTGTTTTATTGACAACATACGTGAAACACAAGAG AAGGATGGCGTTGTTGTTTTGCAAAAGAAGCTAGTATCTGAAATTTTGAGGATCGATTCGGGTTCGGTTGGATTTAATAATGATAGTGGCGGACGGAAGA CGATAAAGGAGAGAGTTTCGAGGTTCAAAATTCTTGTCGTTCTCGATGATGTGGATGAGAAGTTTAAATTTGAAGATATGTTGGGAAGTCCTAAAGATTT TATTTCTCAAAGTAGATTCATTATTACTTCAAGAAGTATGAGAGTTTTGGGTACTTTGAATGAGAATCAATGCAAGTTGTATGAAGTTGGATCGATGAGC AAACCACGTTCGCTTGAACTCTTCTCCAAGCATGCATTCAAAAAGAATACGCCTCCATCGTATTATGAGACTCTAGCAAATGACGTCGTAGATACTACAG CAGGACTTCCATTGACTCTGAAGGTTATAGGATCGCTTTTATTTAAACAAGAGATTGCGGTTTGGGAAGACACGTTGGAACAATTACGTAGAACACTTAA CCTTGATGAGGTTTATGATAGGCTAAAAATAAGTTATGATGCGTTGAACCCGGAGGCAAAAGAGATTTTCTTGGATATAGCTTGCTTCTTCATCGGACAA AATAAAGAAGAACCGTATTACATGTGGACCGACTGTAATTTTTATCCAGCAAGTAATATTATTTTTCTCATTCAAAGATGTATGATACAAGTTGGGGATG ATGATGAGTTTAAAATGCACGACCAACTTAGAGATATGGGTAGAGAAATTGTGAGACGAGAGGATGTACTGCCGTGGAAGAGAAGTAGAATATGGTCGGC AGAAGAAGGGATTGATCTCTTGCTGAACAAAAAGGGATCAAGTAAAGTAAAAGCAATTAGCATACCCTGGGGTGTCAAGTATGAGTTTAAGAGCGAATGT TTCTTGAATTTGTCAGAGTTGAGATACCTCCATGCAAGGGAAGCCATGCTTACCGGAGATTTCAACAATCTTCTCCCGAATTTAAAGTGGCTTGAGTTGC CATTTTACAAACATGGAGAGGATGATCCTCCTTTGACCAATTATACCATGAAAAATCTGATAATTGTTATTCTTGAGCATAGCCACATAACGGCTGATGA TTGGGGAGGTTGGAGGCATATGATGAAGATGGCTGAGAGGCTGAAAGTTGTACGACTTGCTTCAAACTATAGTTTGTACGGAAGACGTGTTCGCCTTTCT GACTGTTGGCGCTTCCCCAAAAGCATTGAGGTATTATCCATGACTGCGATAGAAATGGATGAAGTTGATATTGGGGAGTTAAAGAAGCTAAAGACGTTGG TTCTGAAATTCTGTCCAATACAAAAGATAAGTGGGGGAACCTTTGGTATGTTGAAGGGACTTCGAGAGCTTTGTCTCGAATTCAACTGGGGGACAAATTT GAGAGAGGTAGTTGCCGATATTGGTCAACTTTCATCTCTCAAAGTCTTGAAAACAACCGGAGCTAAGGAGGTCGAGATTAATGAATTTCCATTAGGTTTG AAGGAGTTATCCACTTCATCTCGGATTCCGAATCTTTCACAGTTGTTGGATTTGGAGGTACTGAAGGTTTATGATTGCAAGGATGGATTTGACATGCCTC CTGCTAGTCCGAGTGAAGATGAAAGTAGTGTGTGGTGGAAGGTATCCAAGTTGAAGTCTTTGCAACTCGAGAAGACAAGAATCAATGTCAACGTTGTGGA TGATGCTTCTTCCGGTGGTCACCTCCCTCGTTACTTACTACCAACATCCCTAACCTATCTTAAAATTTATCAGTGTACAGAACCAACGTGGCTTCCAGGA ATAGAGAACTTGGAGAATTTGACTTCGCTGGAAGTCAACGACATCTTCCAAACTCTTGGAGGTGACTTGGATGGGCTACAAGGGTTGAGATCATTGGAAA TTCTTAGGATTCGGAAAGTAAATGGTTTAGCTCGGATCAAAGGGCTTAAGGATCTCTTGTGTTCTTCTACCTGCAAGTTGCGGAAATTTTATATTACAGA ATGCCCCGACCTCATTGAGTTACTCCCATGCGAACTCGGCGGCCAAACAGTAGTAGTCCCCTCTATGGCAGAACTGACCATTAGGGATTGTCCACGGCTG GAGGTTGGCCCGATGATAAGATCACTCCCAAAGTTCCCAATGCTAAAGAAGTTGGACCTCGCGGTGGCAAATATAACTAAAGAGGAGGATCTGGATGCGA TTGGATCCCTAGAAGAGTTGGTTAGTTTGGAGTTAGAGTTAGACGATACATCTTCCGGTATAGAGAGGATAGTTTCCTCTTCGAAGCTGCAAAAGTTAAC TACACTCGTAGTGAAGGTGCCGAGTTTGCGGGAGATTGAAGGGCTTGAAGAGTTGAAGTCTTTACAAGATTTGTATCTAGAGGGTTGCACGTCACTGGGG AGACTACGTCTGGAGAAGCTGAAGGAGCTAGACATTGGAGGATGCCCTGACCTCACTGAGTTAGTCCAAACAGTAGTAGCAGTCCCCTCTTTGAGAGGAC TGACCATTAGGGATTGTCCACGGCTGGAGGTTGGTCCAATGATACAATCTCTTCCAAAGTTCCCAATGCTAAATGAATTGACGCTCTCGATGGTAAATAT CACTAAGGAGGATGAGCTGGAGGTGCTTGGATCCCTAGAAGAGTTGGATAGTTTGGAGTTAACGTTAGACGATACATGTTCCAGCATAGAGAGGATATCT TTCTTGTCGAAGCTGCAAAAGTTAACTACACTCATAGTGGAGGTGCCGAGTTTGCGGGAGATTGAAGGTCTTGCAGAGTTGAAGTCTTTACGAATTTTGT ATCTAGAAGGATGCACGTCGTTGGAAAGACTGTGGCCTGATCAACAACAGTTGGGTAGTCTGAAGAACCTGAATGTGCTCGACATCCAAGGTTGTAAAAG CTTGAGTGTTGACCATCTCTCTGCACTCAAGACCACTCTACCGCCCAGGGCGAGGATAACATGGCCCGATCAGCCCTACAGATGA
AA sequence Show only first row Show all	>Lus10004719 pacid=23162924 polypeptide=Lus10004719 locus=Lus10004719.g ID=Lus10004719.BGIv1.0 annot-version=v1.0 MSYLREVATAVALLLPFILLNKFWRPNSKDSIVNDDDDSTSEVDAISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLK GKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLK GWHIGKNDKQGAIADKVSADIWSHISKENLILETDELVGIDDHITAVLEKLSLDSENVTMVGLYGMGGIGKTTTAKAVYNKISSCFDCCCFIDNIRETQE KDGVVVLQKKLVSEILRIDSGSVGFNNDSGGRKTIKERVSRFKILVVLDDVDEKFKFEDMLGSPKDFISQSRFIITSRSMRVLGTLNENQCKLYEVGSMS KPRSLELFSKHAFKKNTPPSYYETLANDVVDTTAGLPLTLKVIGSLLFKQEIAVWEDTLEQLRRTLNLDEVYDRLKISYDALNPEAKEIFLDIACFFIGQ NKEEPYYMWTDCNFYPASNIIFLIQRCMIQVGDDDEFKMHDQLRDMGREIVRREDVLPWKRSRIWSAEEGIDLLLNKKGSSKVKAISIPWGVKYEFKSEC FLNLSELRYLHAREAMLTGDFNNLLPNLKWLELPFYKHGEDDPPLTNYTMKNLIIVILEHSHITADDWGGWRHMMKMAERLKVVRLASNYSLYGRRVRLS DCWRFPKSIEVLSMTAIEMDEVDIGELKKLKTLVLKFCPIQKISGGTFGMLKGLRELCLEFNWGTNLREVVADIGQLSSLKVLKTTGAKEVEINEFPLGL KELSTSSRIPNLSQLLDLEVLKVYDCKDGFDMPPASPSEDESSVWWKVSKLKSLQLEKTRINVNVVDDASSGGHLPRYLLPTSLTYLKIYQCTEPTWLPG IENLENLTSLEVNDIFQTLGGDLDGLQGLRSLEILRIRKVNGLARIKGLKDLLCSSTCKLRKFYITECPDLIELLPCELGGQTVVVPSMAELTIRDCPRL EVGPMIRSLPKFPMLKKLDLAVANITKEEDLDAIGSLEELVSLELELDDTSSGIERIVSSSKLQKLTTLVVKVPSLREIEGLEELKSLQDLYLEGCTSLG RLRLEKLKELDIGGCPDLTELVQTVVAVPSLRGLTIRDCPRLEVGPMIQSLPKFPMLNELTLSMVNITKEDELEVLGSLEELDSLELTLDDTCSSIERIS FLSKLQKLTTLIVEVPSLREIEGLAELKSLRILYLEGCTSLERLWPDQQQLGSLKNLNVLDIQGCKSLSVDHLSALKTTLPPRARITWPDQPYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10004719 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	4.5	0.8624
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	4.9	0.8728
AT4G15545			unknown protein		Lus10034001 [exp]	6.7	0.8342
AT1G17430			alpha/beta-Hydrolases superfam...		Lus10012409 [exp]	7.0	0.8414
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10007512 [exp]	8.1	0.8224
AT3G48200			unknown protein		Lus10039976 [exp]	8.8	0.8623
AT2G48070		RPH1	resistance to phytophthora 1 (...		Lus10029632 [exp]	13.3	0.8601
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10002534 [exp]	13.9	0.8219
AT3G04550			unknown protein		Lus10042554 [exp]	21.9	0.8204
AT5G15270			RNA-binding KH domain-containi...		Lus10017596 [exp]	22.1	0.7798

Compare expression of checked genes

Lus10004719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.