Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 169 / 1e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 135 / 5e-32 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27170 134 / 1e-31 transmembrane receptors;ATP binding (.1.2) AT1G27180 128 / 9e-30 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 124 / 1e-28 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G11170 118 / 1e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 114 / 1e-25 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G16950 114 / 2e-25 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G51630 112 / 8e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G16890 111 / 1e-24 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000331 [exp] 483 / 4e-154 AT5G36930 217 / 1e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 434 / 2e-138 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 442 / 3e-137 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 430 / 2e-135 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 432 / 2e-131 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007808 [exp] 422 / 2e-129 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 419 / 9e-129 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004719 [exp] 417 / 2e-127 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007809 [exp] 405 / 4e-126 AT5G36930 239 / 5e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 206 / 1e-54 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G142600 [exp] 181 / 2e-46 AT5G36930 535 / 5e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 181 / 3e-46 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 178 / 1e-45 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018396 [exp] 172 / 1e-45 AT5G36930 374 / 5e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 177 / 3e-45 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 173 / 2e-44 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 172 / 1e-43 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 169 / 6e-43 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 169 / 1e-42 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10004726 pacid=23162963 polypeptide=Lus10004726 locus=Lus10004726.g ID=Lus10004726.BGIv1.0 annot-version=v1.0 ATGAGCGATTCACTAGGGCTCCAACTCTTCTGCAGACATGCATTCAAAGCCAGTTTTCCTCCTACAGATTATGTGTCTTTAGCGAAAAAGATCGTATCGA CTACAGGAGGATTACCGTTGACTCTTAAGGTTATAGGATCACTTTTATTTAGAGAAGATACATCAATTTGGGAAGAAAAGTTGGAACAGTTGCATGAAAC ACTCGAGCTCGAGGTCATGGACAGGTTAAAGATAAGTTACGATACACTCACGTACGAGGCACAACAAATATTCCTGGACATTGCATGTTTCTTCATCGGA ACAGGCAAAGAATTGCCTTCCTACATGTGGAGTAGTTGTAACTACTACCCCACGAGTAACATTAACGTTCTTGTTCAAAGATCAATGATCAAAATCGACG ATGATAACAAGTTTCAAGTGCATGACCAGCTTAGAGATATGGGCAGAGAAATCGTTCGCAAAGAAGATGTAGAGCGTCCGTGGATGAGGAGTAGAATATG GTCGGGCGAAGAAGGAATGGAGATCTTATCTAATAGAAAGGGAACAAGTTCAGTTAAACTACTTAGAGTAGACCCATTTCCACTAGTAGTCGACGAGTTT CGAAGTGAATGCTTCGCAAATTTGTCCGAGTTGAAATACTTCGAGGCTGGACCACAATTTCTTACCGGAGATTTCAAGAATCTTCTCCCAAATTTAAGAT GGCTGAAGTTGCAGCCAGATTGGCAATCCTTGAGAGAAGGCTGTATAAATTTTAGTATGAAAAATTTGGCAATCCTTGATCTCAACGGGAACTCCTTCTC AGATAAATGGGAAGGCTGGAGCCAAATCAAGCAAACATTGGACATTGGGGAGTTGAACAAGATGAAAGTTTTGGATCTCAGCTATACTAGAATGAGTAAG ATATGTGGGGGAACCTTTGGTATGTTGAAGCGACTTCGAGTGCTCGATCTCACCAACTTCAAGTGTGAGAACTTGAGAGAAGTACTAGCCGCGGATGTCG GTGAATTGAAGTCTCTTAAAATCCTGAGAACGACAGGAGTACTTAGCGGTGTCGAGTATGAAGCACCTACAGGTTTGAAGGAGTTATGCACTTCATCTCC GGTTTCGAATCTCGCAGAGCTTCTTCAGTTAGAGGTATTGGATGTTTATGACTGCAAGGATGGGTTTGAGTTCCCTCTTGCTCCGATGGCCACAACCGGT GAGGATAGCGCAGTCTTGTTGTGGAAGGTATCCAAGTTGAAGTCTCTATCACTCACGAAGACAAATATCAATAACTTTGCAAGTAGTAGTAATGGTGGCA ATACTTCACCAATTTCTCCTTCTCGGTTTCCATCCTCGCTAATCTCGCTCAAAATCACGTATTGTCCAGCAGTGTGGCTACCGAGTCTGGAGAATCTCGT AAACTTGACTTCGTTACATTTGAGCGAAAACGACCGCCTGCAATTAGGAGTGGTCGACGTCGGAGTGTTGAACAAGCTAAAGGTTTTGGTTCTCAAAAAC ACTAAAATAAGTAGCAAGGTATGTGGGGGAACCTTTGGTATGTTGAAGGAACTTCGCGAGCTTGATCTCACCAACTTCGAGTGTGAGAATTTGAGAGAAG TATTTGCGAATGTCGGCGAATTGACATCTCTTAGAATCTTGAGCACAAAGGGAATTAATGAAGTAGTCGAGTATGAAGCACCTATAAGTTTGAAGGAGTT AACCACTTCATCTCGGATTTCGAATCTCGCAAAGCTCCTTGAGTTAGAGGAACTGCATGTCTTCGATTGCGAGGATGGGTTCGACCTCCCGAATGACGAT AATGAAGTCTTGTGGTGGAAGGTATCCAAGTTGAAGTCTCTATCTGTAAAGATGACAAATATGAATACTTCGCTTCCTCAATCTGCCCCTCTGCTGCCAT CCTCACTATCATCTCTCGAAATCGTGAATTGTCAAGTAGTATGGCTACCGAGTCTGGAGAATCTGGAGAACCTAGCCTTCTTAACAATAAAAGATTGTCG AAATCCTGGCTTGTACGGGATCGAAAAGCTGAAATCGTTGCGGTTTCTCGATATCATGAATGTAGCTGGTTTAACTCGGATCCATGGCCTTGGAGATTTG ATTTCTTCCATATTTTGCGTATTGGACTTGTTAAGCATCTGCAGTTGCCCTGATCTTATCGAGATACTACCATTCGAGCTTGATGTCGTTCGAGTAATCA TTCCTTCACTGAAGCTACTATGCATCTACGATTGCCCACAGTTGGAAGTAGGTCCGGTGATACGGGGTCTACCGAAGTTCCCTCTGCTTGGTGAGTTGAC GCTTGTATCGACAAAGATTACTAGTATGTACAATGATCATGATCATGTTCTTCGAAAAGCGGAGCTTGAAAGGCTTGGATCATTAGAAGAGTTAGTTGAG ATGTATTTAGGCGAATTGCCGTCTTTCATAGAGAGAATACCTTCATTGTCAAAGTTACAGAAGCTGCAGAAATTAAGAATTGATAATTCGCCGAGTTTGC TGGAGATCGAAGGGCTTGCAGAGCTTACGTCTTTGGAAGAACTGGAGTTGAGTTATTGCTCGTCGTTGGAGAGATTATGGCCTGCTGATCAACAACTGTC TGGTTTGGAAAATTTGAAGAGGCTCGACATTAGAGGATGCCTAAGCTTGAGCTTTGACGATCTCTCTGTCGTCAAGACGAGTCTACCCAATGTAGACATA CGTTGGCCTTGTGAAGGAGTGATATTGGAGGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGACGAGGAGGACATTGACGGCGACG AGGATGACATTGACGGCGACGAGGATGATGACCGGGAAGGATGA
AA sequence Show only first row Show all	>Lus10004726 pacid=23162963 polypeptide=Lus10004726 locus=Lus10004726.g ID=Lus10004726.BGIv1.0 annot-version=v1.0 MSDSLGLQLFCRHAFKASFPPTDYVSLAKKIVSTTGGLPLTLKVIGSLLFREDTSIWEEKLEQLHETLELEVMDRLKISYDTLTYEAQQIFLDIACFFIG TGKELPSYMWSSCNYYPTSNINVLVQRSMIKIDDDNKFQVHDQLRDMGREIVRKEDVERPWMRSRIWSGEEGMEILSNRKGTSSVKLLRVDPFPLVVDEF RSECFANLSELKYFEAGPQFLTGDFKNLLPNLRWLKLQPDWQSLREGCINFSMKNLAILDLNGNSFSDKWEGWSQIKQTLDIGELNKMKVLDLSYTRMSK ICGGTFGMLKRLRVLDLTNFKCENLREVLAADVGELKSLKILRTTGVLSGVEYEAPTGLKELCTSSPVSNLAELLQLEVLDVYDCKDGFEFPLAPMATTG EDSAVLLWKVSKLKSLSLTKTNINNFASSSNGGNTSPISPSRFPSSLISLKITYCPAVWLPSLENLVNLTSLHLSENDRLQLGVVDVGVLNKLKVLVLKN TKISSKVCGGTFGMLKELRELDLTNFECENLREVFANVGELTSLRILSTKGINEVVEYEAPISLKELTTSSRISNLAKLLELEELHVFDCEDGFDLPNDD NEVLWWKVSKLKSLSVKMTNMNTSLPQSAPLLPSSLSSLEIVNCQVVWLPSLENLENLAFLTIKDCRNPGLYGIEKLKSLRFLDIMNVAGLTRIHGLGDL ISSIFCVLDLLSICSCPDLIEILPFELDVVRVIIPSLKLLCIYDCPQLEVGPVIRGLPKFPLLGELTLVSTKITSMYNDHDHVLRKAELERLGSLEELVE MYLGELPSFIERIPSLSKLQKLQKLRIDNSPSLLEIEGLAELTSLEELELSYCSSLERLWPADQQLSGLENLKRLDIRGCLSLSFDDLSVVKTSLPNVDI RWPCEGVILEDEEDEEDEEDEEDEEDEEDIDGDEDDIDGDEDDDREG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10004726 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10010987 [exp]	1.4	0.9881
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	3.2	0.9791
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	3.5	0.9611
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	3.5	0.9780
AT3G18670			Ankyrin repeat family protein ...		Lus10035567 [exp]	3.9	0.9557
AT5G18970			AWPM-19-like family protein (....		Lus10041238 [exp]	3.9	0.9719
AT1G54400			HSP20-like chaperones superfam...		Lus10032902 [exp]	4.0	0.9728
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009445 [exp]	4.0	0.9536
					Lus10016944 [exp]	5.7	0.9644
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	6.0	0.9638

Compare expression of checked genes

Lus10004726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.