Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66090 182 / 2e-53 Disease resistance protein (TIR-NBS class) (.1) AT1G27180 189 / 8e-53 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 187 / 3e-52 transmembrane receptors;ATP binding (.1.2) AT5G36930 185 / 1e-51 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G58120 180 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 179 / 2e-49 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 178 / 3e-49 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 177 / 4e-49 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G17600 176 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63860 176 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002247 [exp] 483 / 1e-163 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008526 [exp] 484 / 4e-162 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 491 / 2e-161 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10002249 [exp] 475 / 2e-159 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 476 / 3e-158 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004719 [exp] 459 / 3e-151 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 456 / 4e-150 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007812 [exp] 423 / 2e-139 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 396 / 2e-127 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G046000 [exp] 251 / 7e-78 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 248 / 1e-77 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 254 / 2e-76 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 253 / 4e-76 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 243 / 8e-76 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 252 / 5e-75 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 250 / 2e-74 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 237 / 3e-73 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 244 / 1e-72 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 243 / 8e-72 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10004727 pacid=23162961 polypeptide=Lus10004727 locus=Lus10004727.g ID=Lus10004727.BGIv1.0 annot-version=v1.0 ATGGCTACCTTGATTCTTCCGTTGATTATTCTCTACAAGTTGTGGTATGGAAGAGGAGGTGTTGATGGCGATTCAAAGGACCGCAACGACGACGAGAACA ATCAACAAACAAGTCTGACATCTGTCGTTGATGCATCTTCTTCCACTGCTACCTCTGCAGATCCCCCTAACTCGTCGCCCCTTCCCTCTGTGGAGTATGA GGTATTTTTGAGCTTCAGGGGTCCGGATACCCGCCATCAGATAACTGATATTCTATATCGTTTTCTTTCTCACACAAAGATTCACACGTTTAAAGACGAC AATGAGCTTCGTAAGGGAGAGGAAATAGGATCCAACCTCATTAAAGCAATCGACCAGTCTAAGATTTATGTTCCCATCATATCAAAGGGTTACGCCCATA GTAAATGGTGCCTGATCGAGCTTGCTGAAATCGTGTGCCGCCAAGAGCAAGACTCTCGCCGCATCATACTTCCCATTTTTTATATGGTGAATCCCAACGA CGTACGCCACCAGACTGGACCTTATCAAAATGCGTTTCAGGAGCATGTGAAGAAGTTCGATCAAAAGACAACACACGGTTGGAAAGATGCTCTAAATAAG GTTGGAACTTTGAAAGGATGGCACGTCAAAAGCAACGACGAGTTGGGTGCTACATTAGATGAAGTCTCTGCAAACATATGGTCACATCTAAGCAAAGGTA TTTTTAATGTGGACACTGATGAGCTGATTGGAATTGATAATCATATAGAAGCCGTAGTAGAGAAGTTGAGTCTAGATTCTAAAAATGTCACAATGGTCGG CATTCATGGTATGGGCGGAATTGGCAAGACCACCGTTGCAAAGGCTGTCTACAACAATGTCTCTTCTAATTTCGATCGTTGTTGTTTTGTGGAAAACATA CGAGAAACACAAAAACAGAATGATGGTATTGTTGTGTTGCAAAAGAAGATAATATCAGAGATTTTGAGGACGGACTCGATTGAACTTACTCACGATAGCG GTGGAAGGAAAATGATGAAGGAGAGGGTCTCTAGGTTTAAAACTCTTATCATTCTCGACGATGTGGATGAGAAGTTTCGATTTGAATTACTAATGGGAAG TCAATCGTTAGGACAGATTCATCGTGACTTCTAG
AA sequence Show only first row Show all	>Lus10004727 pacid=23162961 polypeptide=Lus10004727 locus=Lus10004727.g ID=Lus10004727.BGIv1.0 annot-version=v1.0 MATLILPLIILYKLWYGRGGVDGDSKDRNDDENNQQTSLTSVVDASSSTATSADPPNSSPLPSVEYEVFLSFRGPDTRHQITDILYRFLSHTKIHTFKDD NELRKGEEIGSNLIKAIDQSKIYVPIISKGYAHSKWCLIELAEIVCRQEQDSRRIILPIFYMVNPNDVRHQTGPYQNAFQEHVKKFDQKTTHGWKDALNK VGTLKGWHVKSNDELGATLDEVSANIWSHLSKGIFNVDTDELIGIDNHIEAVVEKLSLDSKNVTMVGIHGMGGIGKTTVAKAVYNNVSSNFDRCCFVENI RETQKQNDGIVVLQKKIISEILRTDSIELTHDSGGRKMMKERVSRFKTLIILDDVDEKFRFELLMGSQSLGQIHRDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27180			disease resistance protein (TI...		Lus10004727 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	2.4	0.9389
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	5.5	0.9334
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	5.9	0.9215
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	6.7	0.9331
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	6.9	0.9259
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022306 [exp]	7.7	0.9143
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	10.2	0.9095
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Lus10028234 [exp]	11.6	0.9093
AT2G16980			Major facilitator superfamily ...		Lus10025087 [exp]	12.0	0.8636
AT5G36930			Disease resistance protein (TI...		Lus10007808 [exp]	12.2	0.9066

Compare expression of checked genes

Lus10004727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.