Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 341 / 5e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 319 / 2e-90 transmembrane receptors;ATP binding (.1.2) AT1G27180 315 / 7e-89 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 300 / 3e-84 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 276 / 2e-76 TAO1 target of AVRB operation1 (.1) AT5G18360 267 / 6e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 267 / 5e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 263 / 3e-72 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 263 / 4e-72 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G11250 261 / 1e-71 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033953 [exp] 1294 / 0 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 1250 / 0 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007829 [exp] 1243 / 0 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 1154 / 0 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007831 [exp] 1129 / 0 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007821 [exp] 1123 / 0 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007823 [exp] 1120 / 0 AT1G27170 322 / 3e-92 transmembrane receptors;ATP binding (.1.2) Lus10000423 [exp] 1080 / 0 AT1G27180 338 / 5e-95 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007825 [exp] 1058 / 0 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 400 / 3e-122 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 404 / 5e-122 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 399 / 8e-122 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 402 / 2e-121 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 400 / 2e-120 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 399 / 9e-120 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 391 / 5e-118 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 396 / 1e-117 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 392 / 3e-117 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 388 / 2e-116 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10004747 pacid=23162943 polypeptide=Lus10004747 locus=Lus10004747.g ID=Lus10004747.BGIv1.0 annot-version=v1.0 ATGAATTACCTAGCACGAACCGCGACGGTTGCTGTGATCATTGCTTTGGTTAAGCTGTTTCTGGGGAGGAGGAGGAGGAGATCTGATGACTCAAACAATG ATACTTCTCAACAATCCGATTCTACTTCTACTTCTACGTCTGGAGATTCAGATTGGGTGCCTCTTCCGATCGGGGAGTATGAGGTGTTTCTGAGTTTTAG AGGTCCGGATACACGTAGCAATATTACGAATATTCTTTACCGATTCCTTGCTCGTTCGAAAGTCCATACATTTAGAGACGATGATGAACTCCGTAAGGGA GAAGGAATATGGCCCAATCTTGTTAGAGCCATCGGTCAGTCGAAGATTTCCATTCCTATATTGTCACCTCGTTATGCTGAGAGCAAGTGGTGTCTCAAAG AACTTGTTGAAATTACTGAGCATCGAAAACGAGAAAAGGGGCACATCGTACTTCCCATCTTTTACAAAGTGGATCCTAGAGACGTACGCCATCAAAGCGG ACCTTATCAAATTGCTTTTCAACGACACAAGAGGAACAAATTTGATGAGGAGACCATACAAAGTTGGAAAGCCGCTCTGAATGAGATTGGATCTTTGAAA GGGTGGCACATCAAAACCAAAGAAGAGGAGGTTGATGTTGCAGATCTTGTTTCTGGAGTTGTTTGGTCGCATCTAAGCAAGAATAATAATGTATTAGAGA CTGATGAGTTGGTTAGAATTGATGACCACGTAAAACAAGTAGTAGATATGTTAGATTTAGGCTCTGAAGGTGTGAATCTAGTTGGTGTTCATGGTATGGG TGGTATCGGAAAGACCACTCTCGCAACAGCGGTCTATAATAATGTTTCTGCTTGCTTCGATCGATATAGTTTTGTGAAAGATATACGAGAAACGCAGCTA AAGATGGATGGTGTTCTCGTTTTGCAAAAGAAGTTCATTTCTAATATCTTAAGGATGGACTTAGTTGTATCAATCGTTGAAGTTAGTGAAGCAAAGAAAA TCATACGAGGGAGGGTTACTCAGTTCAAGACCCTTGTGGTACTTGATGATGTAGATGAAAAGTTCAACCTTGAGGAAGTCTTAGGAAATCTAGAAGATTT TGCTTCAGGAAGTCGTTTTATCGTAACATCGAGAGACTTAAACGTCTTGAAGAGGTTAAGCAAATGTCAAAGCAAGTTGTACGAAGTTCAAGGAATGAAT CCTAGCCGCTCGCTTCAATTGTTTTGCAAGTATGCATTCAGAAAAGATTTTCCTCCATTGGGTTTTGAGGCCTTATCAGCAAACATTGTATCCACCACTG GAGGACTCCCATTGACACTTAAAGTTATAGGGTCACTTCTCTTCCGTGTAGAAAAGGTTCTCTGGACGGACAAATTGGAGCAATTACGACAAATACCAGA GAAAGGTGTAATGGATCGGTTGATAATTAGCTATAACGATTTGGAACACGAAGCACAACAAATATTTCTAGATATTGCTTGCTTCTACATCGGAGAGGAT AAAGAAATGGCTTCCTACATGTGGATCGATTGCAACTTTCATCCTGCCATTAACATTTATGAACTAGTTCAAAGGTCTATGCTCAAAATAGGAGATCGTA ATGAGTTTCAGATGCACGATCAACTTAGAGATATGGGTACAGAAATTGTCCGTAGAGAAAATATTGAACATCCACAAATGAGAAGCAGAATATGGTCGGG TGAAGAAGCTAACCAACTATTAGTTGACAGCAAGGGAACAAATCAAGTAAAAGCCATTAGAGCACACTCAGAAAATGATCCTGTTTTGGAGCTTCAAAAT GGATGCTTTACTAATCTGACAGAGTTGAGGTATTTTCACGGAAGACAGACGAATCTGAGAGGAGATTTCAGTCATCTTCTTCGGAATTTAAAATGGTTGC GGCTGGAAGTTTATCGATGTTCGAGCCCCGGCACTGCTTGCTTCAATGTGAAAAATTTGATCATATTTCAGTCAGTACGTCACTACCGCATCCAAACCAA GGAGGCAAATAAGCTGAAAGTTCTAATTCTTTCAGATTGTGATAAGATGAGTAAACTCCCGGAATTTCCGGAATCCGGAAGCCTAGAGATATTACACATT GCCTGTTTCGAGAATAAAGACGAAGATCTCGAAATTGGGAAATTGTGTAACCTAAAAGTACTGCGATTGGACTCTTGTCAACTAGGAACAATCAAAGGTG GCACCATTGGGACGACGATGAAAGGACTTCGTGAGCTCGATCTGTCTGACACTGATTGTGATTACGATAGCTTCAGACGATTGATTGTTGACATCGAAGA ACTGCAGTCCCTCCAAATCTTGAATGTTGCCAGTTCTGATCTGGAGGATGTTCTCGAAGGGATTAAGCTACCGAGAAGCTTAAAGCTGCTCAACACCACA TCTGCTTTTGCTAATCTTGACGAGCTATTGGATTTAGAAATTCTCAAAGTTAACGGAGGCTGCATGACTACAGAACTTGTGATCCCGCGTACTATCTCGT GGGTGAATTCATCCAAGTTGACATCAATGACATTGTGGTACATGAAGAGGATAATTATGGTTGAAAGTAAGAGTACCATGCTACCAAATTCCCTCACTAA GCTAGCACTTCACTCGGTACATTCAAACGAAATCCCAAATCTGAAGAATCTAAGCAACTTGATCGAATTGGAAATCTGTAGTTGTCTTAATCTTCAAGTG GTCCAAGACCTTGGAGGGATGAAATCATTGCAGATTCTCAGTATATATAACATGGATGATTTAACTCGTATCAATGGCCTTGGTACTCTCATGTCGTCTG TCAACTGCAGTTTGAAAGAGGTTCACGTCAGAAATTGCCCTCTTCTTCGTGCAGTACTAACATTCGAGCAACAAGATGATGATGCAGTTCAAATTGAATC CTTACTCAGAATGGAGATCATGGAAAGCCCATCCATTGATGGCAGATCAACACCCAGACTGTCCAAGACTCCAATGCTCAAGTATTTGACAATCGGTGAA ATCAGTTTGAACATCAATGAGGAACTTCAGCTGCTTGAAGGGCTTGAGAATCTTGAAGAGCTGACTGAATTGAGGGTGTCCCATTTGCCAAAAGTACAGA GACTTCCTTCGTTGTCGAAACTGAGCAAGTTGAGTAGTTTGAGATTGGAAGATCTTCCGGGTTTGCGGGAGATTGCGGGACTTGGAGGTTTGAAGTCGTT AAAATTGTTGTTTGTTAGAGGTTGCTTGTCGTTGGAAAGACTGCCCATCTCGGATCTACCCTACTCTAGTATGCATCGTATAGTTTTGGACTTGAGAGGA TGCACAAACTTCATTGATATCGAATCCGATCTTTCTCCCCTCGAAAGAAACGATCAAGGCGAACTTAGTGTAATCATCCAGTGGCCACATGAACCCTTGC GGGATTCCGAAACACAGGAGCTTGATAGTGAGTCCGATGGGGAATCTGACAGTGAAGCTGTCTCTGCCATGGAGTTGGAAGAACGAGTAGATTTATAA
AA sequence Show only first row Show all	>Lus10004747 pacid=23162943 polypeptide=Lus10004747 locus=Lus10004747.g ID=Lus10004747.BGIv1.0 annot-version=v1.0 MNYLARTATVAVIIALVKLFLGRRRRRSDDSNNDTSQQSDSTSTSTSGDSDWVPLPIGEYEVFLSFRGPDTRSNITNILYRFLARSKVHTFRDDDELRKG EGIWPNLVRAIGQSKISIPILSPRYAESKWCLKELVEITEHRKREKGHIVLPIFYKVDPRDVRHQSGPYQIAFQRHKRNKFDEETIQSWKAALNEIGSLK GWHIKTKEEEVDVADLVSGVVWSHLSKNNNVLETDELVRIDDHVKQVVDMLDLGSEGVNLVGVHGMGGIGKTTLATAVYNNVSACFDRYSFVKDIRETQL KMDGVLVLQKKFISNILRMDLVVSIVEVSEAKKIIRGRVTQFKTLVVLDDVDEKFNLEEVLGNLEDFASGSRFIVTSRDLNVLKRLSKCQSKLYEVQGMN PSRSLQLFCKYAFRKDFPPLGFEALSANIVSTTGGLPLTLKVIGSLLFRVEKVLWTDKLEQLRQIPEKGVMDRLIISYNDLEHEAQQIFLDIACFYIGED KEMASYMWIDCNFHPAINIYELVQRSMLKIGDRNEFQMHDQLRDMGTEIVRRENIEHPQMRSRIWSGEEANQLLVDSKGTNQVKAIRAHSENDPVLELQN GCFTNLTELRYFHGRQTNLRGDFSHLLRNLKWLRLEVYRCSSPGTACFNVKNLIIFQSVRHYRIQTKEANKLKVLILSDCDKMSKLPEFPESGSLEILHI ACFENKDEDLEIGKLCNLKVLRLDSCQLGTIKGGTIGTTMKGLRELDLSDTDCDYDSFRRLIVDIEELQSLQILNVASSDLEDVLEGIKLPRSLKLLNTT SAFANLDELLDLEILKVNGGCMTTELVIPRTISWVNSSKLTSMTLWYMKRIIMVESKSTMLPNSLTKLALHSVHSNEIPNLKNLSNLIELEICSCLNLQV VQDLGGMKSLQILSIYNMDDLTRINGLGTLMSSVNCSLKEVHVRNCPLLRAVLTFEQQDDDAVQIESLLRMEIMESPSIDGRSTPRLSKTPMLKYLTIGE ISLNINEELQLLEGLENLEELTELRVSHLPKVQRLPSLSKLSKLSSLRLEDLPGLREIAGLGGLKSLKLLFVRGCLSLERLPISDLPYSSMHRIVLDLRG CTNFIDIESDLSPLERNDQGELSVIIQWPHEPLRDSETQELDSESDGESDSEAVSAMELEERVDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10004747 [exp]	0	1
AT1G48090			calcium-dependent lipid-bindin...		Lus10017107 [exp]	5.7	0.9177
AT4G00800		SETH5	transducin family protein / WD...		Lus10030199 [exp]	8.9	0.8928
AT1G58230			binding (.1)		Lus10028167 [exp]	11.7	0.9136
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	13.4	0.8856
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	14.0	0.8820
AT3G04490			unknown protein		Lus10022024 [exp]	16.7	0.8728
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028660 [exp]	18.9	0.8967
					Lus10001309 [exp]	19.9	0.8723
AT1G58230			binding (.1)		Lus10042867 [exp]	20.7	0.8974
AT1G58230			binding (.1)		Lus10042866 [exp]	21.6	0.8762

Compare expression of checked genes

Lus10004747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.