Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07580 94 / 1e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 91 / 3e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47230 92 / 4e-22 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G61600 91 / 7e-22 AP2_ERF ERF104 ethylene response factor 104 (.1) AT3G23230 84 / 2e-20 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT4G17490 85 / 2e-19 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G43410 77 / 6e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44840 78 / 4e-17 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT4G17500 78 / 6e-17 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G61590 75 / 3e-16 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007841 [exp] 275 / 1e-93 AT5G47230 121 / 4e-33 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) Lus10032498 [exp] 91 / 5e-22 AT5G07580 144 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 89 / 6e-21 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 88 / 1e-20 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10042995 [exp] 87 / 1e-20 AT5G07580 129 / 1e-36 Integrase-type DNA-binding superfamily protein (.1) Lus10011830 [exp] 85 / 2e-20 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10013959 [exp] 81 / 3e-19 AT3G23240 124 / 2e-36 ethylene response factor 1 (.1) Lus10016212 [exp] 82 / 9e-19 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10021873 [exp] 81 / 1e-18 AT3G23230 143 / 4e-44 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154200 [exp] 96 / 4e-23 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.003G080600 [exp] 96 / 8e-23 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.010G072400 [exp] 89 / 6e-22 AT3G23230 85 / 1e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079600 [exp] 91 / 9e-22 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.003G150800 [exp] 91 / 1e-21 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G151000 [exp] 90 / 1e-21 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 90 / 3e-21 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.008G166100 [exp] 84 / 4e-20 AT3G23230 82 / 2e-20 Integrase-type DNA-binding superfamily protein (.1) Potri.002G039200 [exp] 83 / 7e-20 AT3G23230 113 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051700 [exp] 83 / 1e-19 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10004752 pacid=23162937 polypeptide=Lus10004752 locus=Lus10004752.g ID=Lus10004752.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCAATCGAAGCGTACTCCGCTTTCGATCTTATCGTCGACAAGTATCAAATCTTTCTCGAGGATTGCCTCTTTCCAGCTGGGGTTGAATCCT CCTCCTCTTCCGTTAGCTGTGATTCGGCCATTTCGGTTTCCGATTACTACTTCTTCGAGGATTATCCGGTCGATTTAGAGACGAATAATCTCCCCGTGAT CGAACTCTCCGATCCAAAACCGCCCATGATCTCTGAAGAAAAGCCTGGAATCGTCGGATTGAAGAGAGATTCTCTAGGTTTTTCTAAATCAGAGCAGAAA TTTAAGGCCGAATCGAGCAAAATGGAGTCGGAATTCGAACTTAAAACAGCAGTTCCTGCTCCGAGCAGGGACGTTGTTTACGAACTCGGATCTGAACCGA AGACCGATTCATGTCGGGAGACGATTCGATCTGGAGGAGGCGACGGGAGGCGATACAGGGGAGTGAGGCAGAGGCCGTGGGGGAAGTATGCGGCGGAGAT TAGAGATCCGAGCAGGAAAGGATCGAGGCTGTGGCTTGGGACGTTCGATACGTCGAAGGAAGCAGCGAGAGCTTACGATCGAGCTGCGTTCCAGCTTCGA GGCAGGAAGGCGATCCTTAACTTCCCGGCTGACGCCGGCGAGTACAAGGCGGTGGCGGGAAAGGATGAGGAGGAGGCCGACGGTAAACGGAAGCGTCAAA GAGGAGGAGAAGGCGGGAAATGA
AA sequence Show only first row Show all	>Lus10004752 pacid=23162937 polypeptide=Lus10004752 locus=Lus10004752.g ID=Lus10004752.BGIv1.0 annot-version=v1.0 MAEAIEAYSAFDLIVDKYQIFLEDCLFPAGVESSSSSVSCDSAISVSDYYFFEDYPVDLETNNLPVIELSDPKPPMISEEKPGIVGLKRDSLGFSKSEQK FKAESSKMESEFELKTAVPAPSRDVVYELGSEPKTDSCRETIRSGGGDGRRYRGVRQRPWGKYAAEIRDPSRKGSRLWLGTFDTSKEAARAYDRAAFQLR GRKAILNFPADAGEYKAVAGKDEEEADGKRKRQRGGEGGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10004752 [exp]	0	1
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	3.0	0.8670
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	4.7	0.8544
AT5G58940		CRCK1	calmodulin-binding receptor-li...		Lus10040704 [exp]	15.9	0.7279
AT2G23450			Protein kinase superfamily pro...		Lus10000741 [exp]	16.6	0.8172
AT1G76600			unknown protein		Lus10012442 [exp]	18.4	0.8147
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10032277 [exp]	19.6	0.8351
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	20.0	0.8005
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	22.4	0.8276
AT2G39380		ATEXO70H2	exocyst subunit exo70 family p...		Lus10005435 [exp]	23.7	0.8013
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10010719 [exp]	25.2	0.8448

Compare expression of checked genes

Lus10004752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.