Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18460 604 / 0 Protein of Unknown Function (DUF239) (.1) AT5G56530 494 / 9e-174 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT3G13510 484 / 3e-170 Protein of Unknown Function (DUF239) (.1) AT1G55360 480 / 2e-168 Protein of Unknown Function (DUF239) (.1) AT1G23340 461 / 4e-161 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44210 460 / 1e-160 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT1G10750 462 / 2e-160 Protein of Unknown Function (DUF239) (.1) AT5G50150 459 / 4e-160 Protein of Unknown Function (DUF239) (.1) AT1G70550 458 / 7e-160 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) AT2G44220 395 / 2e-135 Protein of Unknown Function (DUF239) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003100 [exp] 857 / 0 AT5G18460 593 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013410 [exp] 493 / 1e-173 AT3G13510 708 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10013046 [exp] 476 / 1e-165 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10029116 [exp] 471 / 1e-163 AT1G10750 642 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10001248 [exp] 437 / 2e-151 AT5G50150 580 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10010315 [exp] 419 / 6e-145 AT3G13510 626 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10042092 [exp] 414 / 1e-142 AT5G50150 540 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10027683 [exp] 400 / 1e-137 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1) Lus10039949 [exp] 398 / 1e-136 AT5G50150 575 / 0.0 Protein of Unknown Function (DUF239) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G050100 [exp] 685 / 0 AT5G18460 635 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.019G024100 [exp] 674 / 0 AT5G18460 622 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.003G221200 [exp] 493 / 1e-173 AT1G55360 716 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G003800 [exp] 491 / 1e-172 AT1G55360 689 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.001G233000 [exp] 486 / 9e-171 AT3G13510 621 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.010G044300 [exp] 469 / 2e-163 AT1G70550 664 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.008G188000 [exp] 468 / 5e-163 AT1G70550 661 / 0.0 Protein of Unknown Function (DUF239) (.1), Protein of Unknown Function (DUF239) (.2) Potri.015G080300 [exp] 454 / 3e-157 AT5G50150 637 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.012G088300 [exp] 452 / 3e-157 AT5G50150 592 / 0.0 Protein of Unknown Function (DUF239) (.1) Potri.006G233600 [exp] 259 / 5e-82 AT5G25950 310 / 3e-102 Protein of Unknown Function (DUF239) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03080 [flax] [poplar] Neprosin Neprosin
Representative CDS sequence Show only first row Show all	>Lus10004766 pacid=23140492 polypeptide=Lus10004766 locus=Lus10004766.g ID=Lus10004766.BGIv1.0 annot-version=v1.0 ATGGGTTGCTACTGCCGCTCATTGGTTATATTAGAAGCAGCAGCAACGTCATATCAAACAAGGTCAACGACAAAGCTTCTTCTTTTTCTTCTTCCGTTGT TTCTTCATCTGACGGCGGCGGCCCGCGGCGGAAGTGGGTTGAATATCTCGTCGGAGTATAATAGACAAGTGAGCAGTTTGAGACTTGGTAGGATTCACAG GCACTTGAACAGGATCAACAAACCCTCTGTTCTCGCCATTCAGAGTCCAGACGGGGATATTATAGACTGTGTTCATAAGAAAAAGCAGCCTGCTTTGGAC CATCCCCTGCTCTTCAACCATAAGCTTCAGAGAGCGCCATCACAAATGCCAAAGGTGAAGAAAGGCGCCGTGCCGGAGAAGCAAACGCAAAAGAACGGCG GCGGTGACGGCGGAGATGAGACTATTGCATGGCAAATGTGGCACCGGAACGGGACGCGATGCCCAAAGGGCACCGTACCGATACGGCGGAGTTCGGTCAA CGACGTGCTGAGGGCCAAATCTTTGTTTCACTTTGGGAAGAAACAGAACCGATTGCCTTTGCCGCTCTCCCGCCGCCGTGATGCCCCCGACGTCGTCAGC GGCAACGGTCACGAGCATGCGATAGCGTACACGGGAGCATCGGAGGAGGTGTATGGAGCCAAGGCTACAATCAACGTGTGGGACCCATCGATACAAGTGG TCAACGAGTTCAGCCTCTCGCAGATCTGGGTACTCTCAGGATCTTTCGACGGCTCAGATCTCAACAGCATCGAAGCTGGGTGGCAGGTCAGTCCGGAGCT CTATGGGGATAGCAGGCCAAGACTCTTTACTTATTGGACCAGTGATTCGTATCAAGCTACGGGATGCTACAACCTACTATGCTCAGGATTCGTACAAACC AACAGTAGGATCGCGATTGGAGCTGCCATCTCTCCCGTTTCTTCCTTCTCCGGCAGTCAATACGACATCTCCATCCTAATCTGGAAGGACCCGAAAATCG GGAACTGGTGGATGAGCTTCGGAGACAACATGCTAGTCGGGTACTGGCCTGCAGAGCTATTTACCCACCTAGCCAACCGGGCCACCATGGTAGAGTGGGG AGGGGAGGTGGTGAACTCGCGGGCCAATGGCCAACACACTTCCACAGAAATGGGCTCGGGCCATTTCGCTAAAGACGGGTTCGGTAAAGCCAGCTATTTC AGGAACCTGGAAGTTGTGGACTCGGACAATAGCCTCACGTCGGCAAAGGACATTTACACCTTAGCCGAGAACACAAACTGTTACGACATCAAGAGTGGCT ACAACGGTGAATGGGGCACCTACTTCTACTACGGCGGACCTGGCCGGAATCCGGCGTGCCAGTGA
AA sequence Show only first row Show all	>Lus10004766 pacid=23140492 polypeptide=Lus10004766 locus=Lus10004766.g ID=Lus10004766.BGIv1.0 annot-version=v1.0 MGCYCRSLVILEAAATSYQTRSTTKLLLFLLPLFLHLTAAARGGSGLNISSEYNRQVSSLRLGRIHRHLNRINKPSVLAIQSPDGDIIDCVHKKKQPALD HPLLFNHKLQRAPSQMPKVKKGAVPEKQTQKNGGGDGGDETIAWQMWHRNGTRCPKGTVPIRRSSVNDVLRAKSLFHFGKKQNRLPLPLSRRRDAPDVVS GNGHEHAIAYTGASEEVYGAKATINVWDPSIQVVNEFSLSQIWVLSGSFDGSDLNSIEAGWQVSPELYGDSRPRLFTYWTSDSYQATGCYNLLCSGFVQT NSRIAIGAAISPVSSFSGSQYDISILIWKDPKIGNWWMSFGDNMLVGYWPAELFTHLANRATMVEWGGEVVNSRANGQHTSTEMGSGHFAKDGFGKASYF RNLEVVDSDNSLTSAKDIYTLAENTNCYDIKSGYNGEWGTYFYYGGPGRNPACQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18460			Protein of Unknown Function (D...		Lus10004766 [exp]	0	1
AT5G06270			unknown protein		Lus10021305 [exp]	4.5	0.8227
AT1G54820			Protein kinase superfamily pro...		Lus10004461 [exp]	5.8	0.8833
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10043373 [exp]	6.9	0.8055
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	17.1	0.8401
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	17.4	0.7546
AT1G63430			Leucine-rich repeat protein ki...		Lus10008310 [exp]	17.9	0.7849
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10028421 [exp]	18.6	0.8105
AT1G17200			Uncharacterised protein family...		Lus10026196 [exp]	21.0	0.8328
AT3G09870			SAUR-like auxin-responsive pro...		Lus10004014 [exp]	21.1	0.8369
AT1G11340			S-locus lectin protein kinase ...		Lus10020052 [exp]	23.7	0.8349

Compare expression of checked genes

Lus10004766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.