Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01060 172 / 2e-52 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 158 / 4e-46 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G28610 145 / 4e-41 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT1G69580 143 / 6e-41 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 140 / 1e-39 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT3G04030 140 / 3e-39 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 140 / 4e-39 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G24120 134 / 1e-37 GARP Homeodomain-like superfamily protein (.1.2) AT3G04450 135 / 2e-37 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 132 / 4e-37 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002483 [exp] 523 / 0 AT2G01060 168 / 6e-51 myb-like HTH transcriptional regulator family protein (.1.2) Lus10005036 [exp] 324 / 1e-112 AT2G01060 175 / 4e-54 myb-like HTH transcriptional regulator family protein (.1.2) Lus10027806 [exp] 319 / 8e-111 AT2G01060 172 / 6e-53 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 167 / 2e-50 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10038734 [exp] 159 / 2e-47 AT2G01060 324 / 1e-111 myb-like HTH transcriptional regulator family protein (.1.2) Lus10024938 [exp] 149 / 6e-42 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10008197 [exp] 145 / 1e-40 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10032778 [exp] 144 / 3e-40 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10022886 [exp] 144 / 3e-40 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G101000 [exp] 346 / 4e-121 AT2G01060 179 / 2e-55 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G117000 [exp] 332 / 1e-115 AT2G01060 173 / 4e-53 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 173 / 2e-52 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 172 / 2e-52 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.019G020900 [exp] 149 / 2e-42 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G191000 [exp] 146 / 3e-41 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.019G032700 [exp] 145 / 6e-41 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.014G000700 [exp] 144 / 1e-40 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.013G048000 [exp] 141 / 3e-39 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.013G060200 [exp] 140 / 4e-39 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004809 pacid=23158611 polypeptide=Lus10004809 locus=Lus10004809.g ID=Lus10004809.BGIv1.0 annot-version=v1.0 ATGGGTTCCAGCCGCTCTGATGGCGCTGCCAATAAGGAGCGACTGCGGTGGACTCAAGAGCTACATGACCGCTTTGAAGAAGCTGTTAACCAGCTTGGTG GCCCTGACAGAGCCACTCCCAAGGGTATCCTAAAGGCCATGGGCATTCCTGGACTCACCATCTATCATGTCAAGAGCCATTTGCAAAAATACAGGATCTC AAAATTTATCCCAGAAACACCCAACAGAGGGATTGAGAGAAGGAACATTTCCGAGATGCTACCGAATTTCAGTGCAACCTCAGGAGCTCAACTCGATGAA GCATTGCAAATGCAGCTGGAAGTCGAAAGGCGCCTCGGCGATCACCTTGATGTTCAGAGGAACCTGAAGCTGAAAATAGAAGCGCAGGGGAGGTTCCTGG AGAGGATGGTGGAAGAGCACAGGAACAGAGCTGCTGCTTTCTCCAAGACAAAGCTGTTCCCAACCATGTCAATGCCATCTCTCTGTGACGAGTCCGAGTC AAACAACGATAAGGGAGACGAGTCGGATTCGGAAGGAGAACGGGTTGAAGTTCAGTCAGGTGAGGTTTTCAGGGCTCTGAAGCGACTCAGAACGGACAAT GACGTCGTTCTGCCACCTCGTTACAAGATTGTCGGTCCGGCGGCGGAGCCCTTAGTTCAGAACATGATGTATGTCCACAAAAATGCAAAGTTCTCGTACC CAACCCAAGGGATCAACTTTGCGTGGAACAACATGGCCTCCTCCTGCCCTTCGCCATTGGTCCCTAGCTATTTCTGA
AA sequence Show only first row Show all	>Lus10004809 pacid=23158611 polypeptide=Lus10004809 locus=Lus10004809.g ID=Lus10004809.BGIv1.0 annot-version=v1.0 MGSSRSDGAANKERLRWTQELHDRFEEAVNQLGGPDRATPKGILKAMGIPGLTIYHVKSHLQKYRISKFIPETPNRGIERRNISEMLPNFSATSGAQLDE ALQMQLEVERRLGDHLDVQRNLKLKIEAQGRFLERMVEEHRNRAAAFSKTKLFPTMSMPSLCDESESNNDKGDESDSEGERVEVQSGEVFRALKRLRTDN DVVLPPRYKIVGPAAEPLVQNMMYVHKNAKFSYPTQGINFAWNNMASSCPSPLVPSYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10004809 [exp]	0	1
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10033022 [exp]	4.7	0.7266
AT5G48500			unknown protein		Lus10020403 [exp]	5.6	0.7364
					Lus10026444 [exp]	18.5	0.6752
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	26.4	0.7222
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Lus10028189 [exp]	26.6	0.6915
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10012554 [exp]	27.5	0.6341
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004538 [exp]	32.2	0.6482
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10035232 [exp]	45.1	0.6418
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10020281 [exp]	54.6	0.6634
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10037720 [exp]	55.9	0.6413

Compare expression of checked genes

Lus10004809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.