Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38120 814 / 0 MAP1, WAV5, PIR1, AUX1 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) AT5G01240 786 / 0 LAX1 like AUXIN RESISTANT 1 (.1.2) AT2G21050 730 / 0 LAX2 like AUXIN RESISTANT 2 (.1) AT1G77690 717 / 0 LAX3 like AUX1 3 (.1) AT5G41800 57 / 1e-08 Transmembrane amino acid transporter family protein (.1) AT1G08230 56 / 3e-08 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G40780 42 / 0.001 LHT1, LTH1 lysine histidine transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002498 [exp] 929 / 0 AT2G38120 842 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10028278 [exp] 778 / 0 AT2G38120 801 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10040212 [exp] 776 / 0 AT2G38120 798 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10025057 [exp] 730 / 0 AT2G21050 866 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10034488 [exp] 728 / 0 AT2G21050 864 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10028078 [exp] 721 / 0 AT1G77690 810 / 0.0 like AUX1 3 (.1) Lus10025628 [exp] 718 / 0 AT1G77690 808 / 0.0 like AUX1 3 (.1) Lus10003903 [exp] 71 / 5e-13 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10009386 [exp] 58 / 7e-09 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113600 [exp] 812 / 0 AT2G38120 796 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.006G098300 [exp] 809 / 0 AT2G38120 795 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.010G191000 [exp] 799 / 0 AT2G38120 734 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.008G066400 [exp] 798 / 0 AT2G38120 746 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.009G132100 [exp] 729 / 0 AT2G21050 832 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.004G172800 [exp] 728 / 0 AT2G21050 829 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.002G087000 [exp] 719 / 0 AT1G77690 745 / 0.0 like AUX1 3 (.1) Potri.005G174000 [exp] 713 / 0 AT1G77690 776 / 0.0 like AUX1 3 (.1) Potri.003G138100 [exp] 77 / 9e-15 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G093600 [exp] 71 / 8e-13 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10004831 pacid=23158598 polypeptide=Lus10004831 locus=Lus10004831.g ID=Lus10004831.BGIv1.0 annot-version=v1.0 ATGGTGCCGCACCAGCAAGCAGAGATGGCGATAGTGTCGAACTCAAACGAAACAGATCACGACAATGGGAGGGTGGAATCGGACGAGAAACAAGAGTCCT CCAACAAGAGTATTGGATTCAAGGACTTCCTCTGGCACGGAGGATCCGTTTGGGACGCGTGGTTTAGCTGCGCTTCAAACCAAGTGGCGCAAGTTCTACT CACACTACCTTACTCCTTCTCCCAGATGGGAATGCTCTCTGGAATCATTCTCCAGATATTCTACGGACTCATCGGCAGCTGGACTGCTTACCTCATCAGT GTTCTCTACATGGAGTACCGCACCAGGAAGGAGAAGGAGAATGTCAGCTTCAAAAACCATGTCATTCAGTGGTTCGAAGTACTGGATGGGTTGCTGGGTC CATACTGGAAAGCAGTGGGTCTGGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTTATTCAGCTAATCGGATGTGCAAGTAATATTTACTACATAAA TGATCGGCTGGACAAGAGGACCTGGACATACATCTTCGGAGCATGCTGCGCAACCACGGTGTTCATCCCGTCTTTCCACAACTACAGGATATGGTCCTTC CTAGGACTGGGAATGACGACTTACACCGCCTGGTACATGACCATCGCAGCTGTGGTTCATGGCCAGGTCGAAGGGGTCACCCACACCGGCCCCAAAAAGC TCGTCCTTTACTTCACCGGCGCCACCAACATCCTCTACACATTTGGTGGCCACGCTGTCACAGTGGAAATAATGCACGCCATGTGGAAGCCACAGAAATT TAAGTCAATCTACTTGCTTGCCACCCTGTACGTTTTCACACTGACAATCCCGTCGGCCACCGCCGTCTACTGGGCATTCGGAGACCAGCTGTTGAACCAT TCAAACGCATTCTCCCTCTTGCCCAAGAACGGATGGCGTGACGGCGCCGTCGTCCTCATGCTCATCCATCAGTTCATTACTTTCGGGTTCGCATGCACCC CTTTGTACTTCGTGTGGGAGAAGGTGATCGGAATGCATGACACTAAAAGCATATGTTTAAGGGCGCTGGCCAGGTTGCCGGTTGTGATTCCAATTTGGTT CCTGGCAATCATCTTCCCTTTCTTCGGTCCGATCAACTCCGCCGTAGGAGCTCTGTTGGTCAGCTTCACCGTTTACATAATCCCTTCTCTGGCTCACATG CTCACTTACCGCAAAGCCTCTGCCAGACAGAATGCGGCAGAGAAGCCGCCCTTCTTTATACCGAGCTGGACGGCGATGTATGTGCTCAACACATTCATTG TGGTGTGGGTATTAGTGGTCGGATTTGGGTTCGGCGGGTGGGCCAGCGTAACCAACTTTGTAAGGCAAGTGGACAGTTTCGGCCTTTTCGCCAAGTGTTA CCAATGCAAGCCTCCGGTGCCGGCAGCCATCGCCGCAGCGCCCACCGCTGCACGTCATCATTGA
AA sequence Show only first row Show all	>Lus10004831 pacid=23158598 polypeptide=Lus10004831 locus=Lus10004831.g ID=Lus10004831.BGIv1.0 annot-version=v1.0 MVPHQQAEMAIVSNSNETDHDNGRVESDEKQESSNKSIGFKDFLWHGGSVWDAWFSCASNQVAQVLLTLPYSFSQMGMLSGIILQIFYGLIGSWTAYLIS VLYMEYRTRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIGCASNIYYINDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSF LGLGMTTYTAWYMTIAAVVHGQVEGVTHTGPKKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSATAVYWAFGDQLLNH SNAFSLLPKNGWRDGAVVLMLIHQFITFGFACTPLYFVWEKVIGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHM LTYRKASARQNAAEKPPFFIPSWTAMYVLNTFIVVWVLVVGFGFGGWASVTNFVRQVDSFGLFAKCYQCKPPVPAAIAAAPTAARHH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10004831 [exp]	0	1
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10002498 [exp]	1.0	0.9722
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028585 [exp]	5.2	0.8908
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Lus10010015 [exp]	10.9	0.9175
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10025678 [exp]	11.5	0.9000
AT5G63930			Leucine-rich repeat protein ki...		Lus10023680 [exp]	13.0	0.8888
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10006640 [exp]	13.3	0.8840
AT1G72300			Leucine-rich receptor-like pro...		Lus10016395 [exp]	16.4	0.8752
AT3G08490			unknown protein		Lus10029519 [exp]	17.9	0.8996
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10038364 [exp]	19.0	0.8783
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10028974 [exp]	20.1	0.8725

Compare expression of checked genes

Lus10004831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.