Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27600 801 / 0 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT1G80350 278 / 3e-88 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 268 / 4e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G45500 261 / 2e-82 AAA-type ATPase family protein (.1.2) AT3G27120 237 / 6e-73 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 214 / 3e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 211 / 3e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08270 183 / 7e-57 unknown protein AT4G28000 199 / 4e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 198 / 5e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020589 [exp] 841 / 0 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10019537 [exp] 834 / 0 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10043381 [exp] 818 / 0 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10023115 [exp] 279 / 1e-88 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011477 [exp] 279 / 1e-88 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 262 / 2e-83 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023310 [exp] 251 / 5e-77 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10038001 [exp] 245 / 4e-76 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 244 / 1e-75 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184500 [exp] 803 / 0 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 801 / 0 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 718 / 0 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 706 / 0 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 704 / 0 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.001G176900 [exp] 277 / 7e-88 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G065100 [exp] 269 / 3e-86 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.011G085200 [exp] 267 / 2e-85 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G057800 [exp] 269 / 6e-85 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G071900 [exp] 249 / 3e-77 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04212 [flax] [poplar] MIT MIT (microtubule interacting and transport) domain CL0671 [flax] [poplar] AAA_lid PF09336 [flax] [poplar] Vps4_C Vps4 C terminal oligomerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10004891 pacid=23157167 polypeptide=Lus10004891 locus=Lus10004891.g ID=Lus10004891.BGIv1.0 annot-version=v1.0 ATGTACAGCAACTTCAAGGAGCAAGCGATCGAGTATGTCAAGCAAGCAGTGCAGGAGGACAACGCCGGGAACTACGCAAAGGCGTTCCCTTTGTACATGA ACGCGCTTGAGTACTTCAAGACGCATCTCAAGTACGAGAAGAACCCTAAGATCAGGGAAGCGATCACCGGGAAGTTCACCGAGTACCTCCGTCGCGCCGA GGAGATCCGCGCCGTGTTGGACGAAGGCGGGCCTGGTCCGGCTTCGAACGGAGACGCTGCCGTGGCCACTCGGCCTAATAAGTCGAAGCCTAAGGATGGG GCAGGAGGAGGTGGAGACGGGGAGGATCCTGAGCAGTCGAAGCTGCGAGCTGGATTGGATTCTGCTATTATTAGGGAGAAACCGAATATTAAGTGGAGTG ATGTTGCTGGGCTTGAGAGTGCTAAGCAGGCTCTCCAGGAGGCTGTTATTTTGCCGGTTAAGTTCCCTCAGTTCTTTACAGGGAAGAGGCGGCCGTGGAA GGCGTTTCTTTTGTACGGGCCTCCTGGTACGGGAAAGTCTTACTTGGCCAAGGCTGTTGCAACTGAAGCAGACTCCACCTTTTTTAGTGTTTCTTCCTCG GACCTTGTCTCAAAGTGGATGGGTGAGAGTGAGAAGCTTGTCTCAAACTTGTTTCAGATGGCCCGTGAAAGTGCTCCTTCAATCATCTTTGTCGATGAAA TAGATTCCCTTTGTGGCCAACGTGGTGAAGGCAATGAAAGTGAAGCCTCTAGACGAATTAAGACTGAACTTCTTGTGCAAATGCAGGGTGTCGGAAACAA TGACCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCATATGCATTAGACCAGGCTATCAGGCGACGTTTTGACAAGCGTATTTACATCCCTCTACCT GATGCAAAGGCTAGACAATACATGTTCAAGGTCCATCTCGGTGACACTCCTCATAACTTGACAGAAAGTGATTTTGAAAGCTTAGGTCGTAGGACAGAGG GTTTCTCAGGTTCAGATATATCCGTCTGCGTGAAGGATGTCCTATTTGAGCCGGTTCGTAAAACCCAGGATGCCATGTATTTCTTTAAGACACCTAACGA TATGTGGGTTCCGTGTGGACCAAGGCAGCCCGGTGCAGTGCAGACCACAATGCAGGATCTGGCTTCAAAAGGAGAAGCTGCAAAGATCCTCCCACCCCCG ATCTCGAAGACCGATTTCGACAAGGTCCTTGCAAGACAAAGGCCGACAGTGAGCAAAAAGGATCTAGAGGTTCACGAAAGATTCACAAAGGAGTTTGGAG AGGAAGGTTAA
AA sequence Show only first row Show all	>Lus10004891 pacid=23157167 polypeptide=Lus10004891 locus=Lus10004891.g ID=Lus10004891.BGIv1.0 annot-version=v1.0 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITGKFTEYLRRAEEIRAVLDEGGPGPASNGDAAVATRPNKSKPKDG AGGGGDGEDPEQSKLRAGLDSAIIREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWKAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSS DLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLP DAKARQYMFKVHLGDTPHNLTESDFESLGRRTEGFSGSDISVCVKDVLFEPVRKTQDAMYFFKTPNDMWVPCGPRQPGAVQTTMQDLASKGEAAKILPPP ISKTDFDKVLARQRPTVSKKDLEVHERFTKEFGEEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	0	1
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	1.0	0.9276
AT1G71980			Protease-associated (PA) RING/...		Lus10014823 [exp]	1.7	0.9148
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	2.4	0.9044
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	4.5	0.9151
AT3G19910			RING/U-box superfamily protein...		Lus10010182 [exp]	5.5	0.8982
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	7.4	0.8972
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10034148 [exp]	7.9	0.8735
AT4G15470			Bax inhibitor-1 family protein...		Lus10021950 [exp]	8.1	0.8812
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	9.2	0.9054
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	9.9	0.8990

Compare expression of checked genes

Lus10004891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.